BAC Information

Click to search

BAC

Clone NameMSMg01-135O20
Chromosome1 (Build37)
Map Location 158,964,507 - 159,113,019
singlet/doubletdoublet
Overlap gene1700057K13Rik, Rasal2
Upstream geneTdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik
Downstream geneGabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135O20.T7 (MSMg01no135_o20.b1)MSMg01-135O20.TJ (MSMg01no135_o20.g1)
ACCAG342262AG342263
length711725
length of high quality
(start - end)		627 (72 - 698)432 (77 - 508)
definitionCHROMAT_FILE: MSMg01no135_o20.b1 PHD_FILE: MSMg01no135_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:09 2005CHROMAT_FILE: MSMg01no135_o20.g1 PHD_FILE: MSMg01no135_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,964,507 - 158,965,133)(159,112,588 - 159,113,019)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTTCTTTCAAGACTTTTATCATGAAGAGGTGTTGGACTTTGT
CAAATGCTTTCTCAGCATCTAATGAGATGATCATGATCTTTGAGTTTGTT
TATATAGTGAATTACGTTGATAGATTTCCATATAGTGAACCATCCTTGCA
TCCCTGAGATGAAGCGTACTTGGTCGTGATGGATGATCATTTTGATGTGA
GTTGCCGCTTGTAGCAGAGAAGCGTTTGTGTTTGTAGAGTCTGTGCGACA
GGGGGCACTCTACACTTGGTTTTAGCTCCCAAGAACTCACCCCTGATTCT
CTTGCCAATGCACTCCTCTTCCTGGGGTGTGGGCTGCAGAAATGGCGAAA
GCGATGGGTTGTCACCTTTGAGACCAGTGAACACTCCAGCCTCCCTCTTG
CTCGGTCTGTCTTGTTCCTGATGGGTTTTGAGTATGGCATTCATGGGTCC
AGTGGCTTTCTACGTGTTTCCTGACCTCTTTGAGTCTGTGGTGTGATGTG
ACCCTCTATTACACATGCTTTGTGCATGTGCACACATGTCAGATAGTCTT
TGCTTTGCCTTTTAGTTCCCTTTGTTCTTCACTACGTGCTCTTCCTGTTG
ATATTCCAGCAATCAGAGATGCTCTCTTCAGCTGTGTCCAGGCTCCCAAT
GAGCCCATCAC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACACAGTTCAGAATCATAAC
TGCCAACCAAGCAGAAACTCACCTGCACTGAGTCCAGGATTTTGTGTGGC
AATAAGCATTTTTAATTAAAAGTTTCCCAATTCCTAAATTTGGAACTGAA
TCTGTAAACATGTGGCAGATTGAGCTAGCCAACCAAGCATTATTGGAGCT
GTCGGGGAAATGTGACTTTAAAAACTCGGATGGGTAAGCTGAGAAAATCC
AGCTGTGTTTATTTCAGATTGCACTAATCAGGGTTCTTTTACGCTTTCCT
TCTGCACCAGTGCATCCACTGGTTTGTGCGCGATGGTTCCCCATCCCCCA
GCCATTCACTTCCCNAAGACCCATTTTAAGTAATGAAGTTATATAACAGG
CATTTACTATGGTAACAGCCTCCCTTGCCTCAATAAGTCAGCAGGTAATC
TTCATCAACAATTAGATTTTAACCCATTGCTAACCCTACTTTCACACTTC
ATAAACTGACTAAAATGTAAACTTGGGATGTTTGTTAATTCAGTGGGGCA
AGCAAACTTCCTAGGAAGTTGTTTTCCCAGTTAAACTTAGGGAACAGTAA
CTTTTGGAACCCCGGGAATTAAATTCCCCTCCGGGGGGCTTAAAACAAAG
GGGAAAAGGGGAAAAAGAAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_o20.b1 MSMg01no135_o20.b1 CHROMAT_FILE:
MSMg01no135_o20.b1 PHD_FILE: MSMg01no135_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:09 2005
         (627 letters)



>mm_chr1_158964307_158965333
          Length = 1027

 Score = 1120 bits (579), Expect = 0.0
 Identities = 615/627 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatcatgaagaggtgttggactttgtcaaatgctttctcagcatctaatgagatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttatcatgaagaggtgttggactttgtcaaatgctttctcagcatctaatgagatgat 260

                                                                       
Query: 61  catgatctttgagtttgtttatatagtgaattacgttgatagatttccatatagtgaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatctttgagtttgtttatatagtgaattacgttgatagatttccatatagtgaacc 320

                                                                       
Query: 121 atccttgcatccctgagatgaagcgtacttggtcgtgatggatgatcattttgatgtgag 180
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccctgcatccctgggatgaagcgtacttggtcgtgatggatgatcattttgatgtgag 380

                                                                       
Query: 181 ttgccgcttgtagcagagaagcgtttgtgtttgtagagtctgtgcgacagggggcactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccgcttgtagcagagaagcgtttgtgtttgtagagtctgtgcgacagggggcactct 440

                                                                       
Query: 241 acacttggttttagctcccaagaactcacccctgattctcttgccaatgcactcctcttc 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacttggcagtagctcccaagaactcacccctgattctcttgccaatgcactcctcttc 500

                                                                       
Query: 301 ctggggtgtgggctgcagaaatggcgaaagcgatgggttgtcacctttgagaccagtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggggtgtgggctgcagaaatggcgaaagcgatgggttgtcacctttgagaccagtgaa 560

                                                                       
Query: 361 cactccagcctccctcttgctcggtctgtcttgttcctgatgggttttgagtatggcatt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 cactccagcctccctcttgctcggtctgtcttgttcctgatgggttttgaatatggcatt 620

                                                                       
Query: 421 catgggtccagtggctttctacgtgtttcctgacctctttgagtctgtggtgtgatgtga 480
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgggtccagtggctttctccatgtttcctgacctctttgagtctgtggtgtgatgtga 680

                                                                       
Query: 481 ccctctattacacatgctttgtgcatgtgcacacatgtcagatagtctttgctttgcctt 540
           ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 681 ccctctattacacatgcattgtgcatgagcacacatttcagatagtctttgctttgcatt 740

                                                                       
Query: 541 ttagttccctttgttcttcactacgtgctcttcctgttgatattccagcaatcagagatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagttccctttgttcttcactacgtgctcttcctgttgatattccagcaatcagagatg 800

                                      
Query: 601 ctctcttcagctgtgtccaggctccca 627
           |||||||||||||||||||||||||||
Sbjct: 801 ctctcttcagctgtgtccaggctccca 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_o20.g1 MSMg01no135_o20.g1 CHROMAT_FILE:
MSMg01no135_o20.g1 PHD_FILE: MSMg01no135_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:09 2005
         (432 letters)



>mm_chr1_159112388_159113219
          Length = 832

 Score =  791 bits (409), Expect = 0.0
 Identities = 426/432 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgacacagttcagaatcataactgccaaccaagcagaaactcacctgcactgagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agtgacacagttcagaatcataactgccaaccaagcagaaactcacctgcactgagtcca 573

                                                                       
Query: 61  ggattttgtgtggcaataagcatttttaattaaaagtttcccaattcctaaatttggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggattttgtgtggcaataagcatttttaattaaaagtttcccaattcctaaatttggaac 513

                                                                       
Query: 121 tgaatctgtaaacatgtggcagattgagctagccaaccaagcattattggagctgtcggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgaatctgtaaacatgtggcagattgagctagccaaccaagcattattggagctgtcggg 453

                                                                       
Query: 181 gaaatgtgactttaaaaactcggatgggtaagctgagaaaatccagctgtgtttatttca 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaaacgtgactttaaaaactcggatgggtaagctgagaaaatccagctgtgtttatttca 393

                                                                       
Query: 241 gattgcactaatcagggttcttttacgctttccttctgcaccagtgcatccactggtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gattgcactaatcagggttcttttacgctttccttctgcaccagtgcatccactggtttg 333

                                                                       
Query: 301 tgcgcgatggttccccatcccccagccattcacttcccnaagacccattttaagtaatga 360
           ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 332 tgcacgatggttccccatcccccagccattcacttctctaagacccattttaagtaatga 273

                                                                       
Query: 361 agttatataacaggcatttactatggtaacagcctcccttgcctcaataagtcagcaggt 420
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 272 agttatataacaggcatttagtgtggtaacagcctcccttgcctcaataagtcagcaggt 213

                       
Query: 421 aatcttcatcaa 432
           ||||||||||||
Sbjct: 212 aatcttcatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |