CCCCCCTCTATAATTGCGGCGCTATACGACTCCTATTCCAAGAGATCCGC
GGAATTCTATGATATCCAACATTTGGCATTTGTTTTGAATAAGCATTTGT
TTAGATCACCAAAAAGCCTATACTGGCGCAGAACCAAAGATTAGCTTTGG
GAAAATGCAAAAAAATAGTCTTAGCTAAAATACTATCCTTTTGTACTAAA
GTGAAAGCACATTTAGTTACAGACGCGCTGCCTGTTAGACTGAGGAATAA
CAGGAGTGAAACACAACACAGAGGAATAGCAAAAAAGACAATGGTAACAT
TTTCCAACAATTTTCTTTCCTATCTGTGGCCAGTCTTTTTTCCATGTTCC
TCTTCTAAAAGCACTGGGCATAGGCTGTGTCTGTCTGTCTCTAGTGATGA
CTACTGCATGGGTGTTAATTAAATGCCCAATTAACTAATACTCTGGGCCA
GAAAACATTTTTAAATGGATAAGACATATGGGTATTATGATGGCTGAAGA
ACAAAAAAATTAATCGTGTCACTGACTGAAATATAACTTGGGTGCATTTT
ATTACAACATAGCAAGAGCTAAGTATGCTCTTGCTGTAAACTCTCTTGGT
GCAACATTAAAAAGTAAAATGAGACAATTCTTATTGTATGACTATATCTA
ANATGCTTTTAGCACTATTATTACTAATATTTCACTTTCAGTATCTCTCT
ATCTTTTTAGTTCTCCATTN

NNNCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAAANNGCAN
GNGAACNANAGAATTATGCGNGANGGGGGNAGAAGAACAAANGGAGGNAG
AACCCACNGGGANCCACGGNAACCCCCACCCACCCAGACANNACCCAGAG
ACAGAAGGAGGAGGGAAGAAAAAAGNCGAGGACCGGGAGAGAGGGCNCAG
CAAAGAGGAGAACNCAGAGCACACAGAGGACCCGGGCAAGGACCCAGCAC
CCGTGTCAGGGGGCNCACAACAGACAGAGACNCCAGCCACAGAGGACCAA
GACCCCCCGCGGCCCCGACTTTTTTTTTTCTGCACAGGCAGNGCAAAACA
ACACAGGCAGGCTCACCCCCCCCCCCCANAAAGAAAACAAAAGACGNCCC
CCCGGGAAAAAGGAAAAGAAGGCNACNCCGAGAGACCACAGCCCGGACNC
AGCAGGGCCCAGACAGACCAGAGAAAAGGAAGGGGGCACCAAGCCGCGCA
GAGCCAGCGGAGCGGAACCAACACCGAAGACAGCCAAGCCGCAGAGCACC
CCACCCCCAACCCGGAGACAACGAGACGGAAAACAACCGGAGCCGAAGAG
ACCAAAGGCCGAGCGACCAGGGGCACGGCGCGAGCGCCAAAGCGCCCCGC
CAAGGAGGCGCGAGAATTTTTTTTTTATTAGGATCATATTGCCAGCGCAT
GGTCTTGCAAACTCTCCTTCCT

Query= MSMg01no136_b01.b1 MSMg01no136_b01.b1 CHROMAT_FILE:
MSMg01no136_b01.b1 PHD_FILE: MSMg01no136_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:20 2005
         (672 letters)



>mm_chr1_108245195_108246267
          Length = 1073

 Score = 1216 bits (629), Expect = 0.0
 Identities = 658/670 (98%), Gaps = 5/670 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctatg---atatccaacatttggcatttgttttgaataagcatttgtttagatca 62
           ||||||||||   ||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctatgataatat--aacatttggcatttgttttgaataagcatttgtttagatca 816

                                                                       
Query: 63  ccaaaaagcctatactggcgcagaaccaaagattagctttgggaaaatgcaaaaaaatag 122
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaaaaagcctatactggtgcagaaccaaagattagctttgggaaaatgcaaaaaaatag 756

                                                                       
Query: 123 tcttagctaaaatactatccttttgtactaaagtgaaagcacatttagttacagacgcgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tcttagctaaaatactatccttttgtactaaagtgaaagcacatttagttacagacgcgc 696

                                                                       
Query: 183 tgcctgttagactgaggaataacaggagtgaaacacaacacagaggaatagcaaaaaaga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgcctgttagactgaggaataacaggagtgaaacacaacacagaggaatagcaaaaaaga 636

                                                                       
Query: 243 caatggtaacattttccaacaattttctttcctatctgtggccagtcttttttccatgtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 635 caatggtaacattttccaacaattttctttcctatctgtggccagtcttttttccgtgtt 576

                                                                       
Query: 303 cctcttctaaaagcactgggcataggctgtgtctgtctgtctctagtgatgactactgca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cctcttctaaaagcactgggcataggctgtgtctgtctgtctctagtgatgactactgca 516

                                                                       
Query: 363 tgggtgttaattaaatgcccaattaactaatactctgggccagaaaacatttttaaatgg 422
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgggcattaattaaatgcccaattaactaatactctgggccagaaaacatttttaaatgg 456

                                                                       
Query: 423 ataagacatatgggtattatgatggctgaagaacaaaaaaattaatcgtgtcactgactg 482
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 455 ataagacatatgggtattatgatggctgaagaacaaaaaaatttatcgtgtcactgactg 396

                                                                       
Query: 483 aaatataacttgggtgcattttattacaacatagcaagagctaagtatgctcttgctgta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaatataacttgggtgcattttattacaacatagcaagagctaagtatgctcttgctgta 336

                                                                       
Query: 543 aactctcttggtgcaacattaaaaagtaaaatgagacaattcttattgtatgactatatc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aactctcttggtgcaacattaaaaagtaaaatgagacaattcttattgtatgactatatc 276

                                                                       
Query: 603 taanatgcttttagcactattattactaatatttcactttcagtatctctctatcttttt 662
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taaaatgcttttagtactattattactaatatttcactttcagtatctctctatcttttt 216

                     
Query: 663 agttctccat 672
           ||||||||||
Sbjct: 215 agttctccat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)