Query= MSMg01no136_d11.b1 MSMg01no136_d11.b1 CHROMAT_FILE:
MSMg01no136_d11.b1 PHD_FILE: MSMg01no136_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:31 2005
(635 letters)
>mm_chr1_38996410_38997442
Length = 1033
Score = 1108 bits (573), Expect = 0.0
Identities = 619/635 (97%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 1 gaaggtgagcgtccctcggacgctgtccacggtgctgaccgggtgctgcatctctggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaggtgagcgtccctcggacgctgtccacggtgctgaccgggtgctgcatctctggttt 260
Query: 61 ctgggcagtttatagggagtcagaagtggggagaagggtctgaagtccttgatcagatca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggcagtttatagggagtcagaagtggggagaagggtctgaagtccttgatcagatca 320
Query: 121 gcatctccagcgagtttgccacagagtgcaggagagtaggttattgatggagagccatga 180
|||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct: 321 gcatctccagggagtttgccacagagtgcaggaaactaggctattgatggagagccatga 380
Query: 181 ttggaaacagggactattcagacttttccattagaattttgatttagaggcatagggaac 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaaacagggactattaagacttttccattagaattttgatttagaggcatagggaac 440
Query: 241 tttgggaaaacacagtgtttgttttctcctaaagagtaattgcagcacttggccactgtg 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cttgggaaaacacagtgtttgttttctcttaaagagtaattgcagcacttggccactgtg 500
Query: 301 agacatggtattatcttaacatctccagagcatcaggtatcctctatggttcccagctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacatggtattatcttaacatctccagagcatcaggtatcctctatggttcccagctca 560
Query: 361 tcttctagactctgttcagttactttgtctaaccttcagctcactgacagccccagacaa 420
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttctagacaatgttcagttactttgtctaaccttcagctcactgacagccccagacaa 620
Query: 421 tcagctgctggccttctggattcttataaaatcttgctcatggtttgcttttgaaatttt 480
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagctgctgcccctctggattcttataaaatcttgctcatggtttgcttttgaaatttt 680
Query: 481 gggttttaatctaattgtctgcatatttctatccatccccccccctatttttctatttga 540
|| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 681 ggtttttaatctaattgtctgcatatttctatccatcctcccc--tatttttctatttga 738
Query: 541 tttggtcttcatctttgtattaacacagacttctcagtaagacctcgtggggttggtttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttggtcttcatctttgtattaacacagacttctcagtaagacctcgtggggttggtttg 798
Query: 601 cagtacctcctgttatcaaatgatcacaatcataa 635
|||||||||||||||||||||||||||||||||||
Sbjct: 799 cagtacctcctgttatcaaatgatcacaatcataa 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1033
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1023
Effective search space: 639375
Effective search space used: 639375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_d11.g1 MSMg01no136_d11.g1 CHROMAT_FILE:
MSMg01no136_d11.g1 PHD_FILE: MSMg01no136_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:31 2005
(632 letters)
>mm_chr1_39161381_39162412
Length = 1032
Score = 957 bits (495), Expect = 0.0
Identities = 533/565 (94%), Gaps = 30/565 (5%)
Strand = Plus / Minus
Query: 1 atttaagcaaagaagagtcacgtaaccagaagaagttcagagagccgggccagtaggctg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 atttaagcaaagaagagtcacgtaaccagaagaagttcagagagctgggccagtaggctg 506
Query: 61 acaggatgacaagctgaaagacggagcaaatggatttgaatggaaaatccacagtgagag 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 acaggatgacaagctgaaagacggagcaaacggatttgaatggaaaatccacagtgagag 446
Query: 121 gctgtttgatgagttttgattggtaaggtcttcagttaccttctattgttgatattggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgtttgatgagttttgattggtaaggtcttcagttaccttctattgttgatattggac 386
Query: 181 attgttgttattttgatgcaggaacttaaaagcatggagacacccagcctgacagcctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgttgttattttgatgcaggaacttaaaagcatggagacacccagcctgacagcctgg 326
Query: 241 gggaagagtttagatccctaatctacgatgaagaaggactctagggatgataaagaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggaagagtttagatccctaatctacgatgaagaaggactctagggatgataaagaacag 266
Query: 301 aagtggtatactactggcccataggtgtcttctagtttggtttacagtggtg-------- 352
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtggtatactactggcccataggtgtcttctagtttggtttacagtggtgggtgtgtg 206
Query: 353 ----------------------tgtgtgtgtgtgttagtcaatgtttttagatgatgcat 390
||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtcaatgtttttagatgatgcat 146
Query: 391 gaatcctttgctctagcttctacatctactctcatcctcactgacctcttccttgctgca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gaatcctttgctctagcttctacatctactctcatcctcactgacctcttccttgctgca 86
Query: 451 cgagaccttattacccgctgaacagcgaggaggggcagaccagagtgggaaagaccacag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 cgagaccttattacccgctgaacagcgaggaggggcagaccagagtgggaaagaccacag 26
Query: 511 ctccctcatgtcttgactacacctt 535
|||||||||||||||||||||||||
Sbjct: 25 ctccctcatgtcttgactacacctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
