Query= MSMg01no136_e09.b1 MSMg01no136_e09.b1 CHROMAT_FILE:
MSMg01no136_e09.b1 PHD_FILE: MSMg01no136_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:36 2005
(270 letters)
>mm_chr1_191723457_191724122
Length = 666
Score = 460 bits (238), Expect = e-134
Identities = 259/272 (95%), Gaps = 12/272 (4%)
Strand = Plus / Plus
Query: 5 gaattcaagtagcaggcccttctcccattccctcacctgtttggccagaattcttgctgt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtagcaggaccttctcccattccctcacctgtttggccagaattcttgctgt 264
Query: 65 gagccgcacagtctccgaaggattccagttctcccccaaaacaaccatggaggagcattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagccgcacagtctccgaaggattccagttctcccccaaaacaaccatggaggagcattc 324
Query: 125 cagcttgtgcaggggccagtcttccttctgagcagggttaggggggaaactgttaatggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcttgtgcaggggccagtcttccttctgagcagggttaggggggaaactgttaatggg 384
Query: 185 acagacacatccacagagggaaacagacagatgggtggggcatgga-a-------acaga 236
||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct: 385 acagacacatccacagagggaaacagacagatggg----gcatggagacagacagacaga 440
Query: 237 cagacagacaagcacacacacacacacacaca 268
||||||||||||||||||||||||||||||||
Sbjct: 441 cagacagacaagcacacacacacacacacaca 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 666
Length adjustment: 9
Effective length of query: 261
Effective length of database: 657
Effective search space: 171477
Effective search space used: 171477
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no136_e09.g1 MSMg01no136_e09.g1 CHROMAT_FILE:
MSMg01no136_e09.g1 PHD_FILE: MSMg01no136_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:36 2005
(319 letters)
>mm_chr1_191865653_191866369
Length = 717
Score = 582 bits (301), Expect = e-171
Identities = 315/321 (98%), Gaps = 4/321 (1%)
Strand = Plus / Minus
Query: 1 atggttagaatgatagaagaatcctttagagaaattacttaattttcaaacactaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atggttagaatgatagaagaatcctttagagaaattacttaattttcaaacactaagtgc 310
Query: 61 tgccagtgaagagggtacatagcctccttcaggatgaatcccaagccccccccccccccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgccagtgaagagggtacatagcctccttcaggatgaatcccaagccccccccccccc-- 252
Query: 121 aagctctctgtcgctcacagtgtgttagaaaactcacactaatttatattttctttttc- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagctctctgtcgctcacagtgtgttagaaaactcacactaatttatattttctttttct 192
Query: 180 -tttttttaagatttattatttattatatgtaagtacactgtagctgtcttcagacactt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttttttttaagatttattatttattatatgtaagtacactgtagctgtcttcagacactt 132
Query: 239 cagaagatgtagtcagatttcgttacggatggttgtgagccaccatgtggttgctgggat 298
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cagaagagggagtcagatttcgttacggatggttgtgagccaccatgtggttgctgggat 72
Query: 299 ttgaactccggaccttcggaa 319
|||||||||||||||||||||
Sbjct: 71 ttgaactccggaccttcggaa 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 717
Length adjustment: 9
Effective length of query: 310
Effective length of database: 708
Effective search space: 219480
Effective search space used: 219480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
