BAC Information

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BAC

Clone NameMSMg01-136J04
Chromosome1 (Build37)
Map Location 57,807,942 - 57,808,552
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136J04.T7 (MSMg01no136_j04.b1)MSMg01-136J04.TJ (MSMg01no136_j04.g1)
ACCAG342737AG342738
length720702
length of high quality
(start - end)
312 (55 - 366)612 (77 - 688)
definitionCHROMAT_FILE: MSMg01no136_j04.b1 PHD_FILE: MSMg01no136_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:00 2005CHROMAT_FILE: MSMg01no136_j04.g1 PHD_FILE: MSMg01no136_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCGACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTTTGTTCATTTTATTGAGTATTTGTGCATCATTA
TTCATAAATGAAATTGGTCTAAAGTTCTCATTCTTTGTTGGGTCTTTGGG
TGGTTTAGGTATCAGCATAATTGTGGCTTCATAGAATGAATTAGGTAGTG
TTCCTTCTGTTTCTATTTTGTAGAATAGTTTGAAGAGTGTTAATATTGGG
TCTTCTTTGAAGGTCTGATAGAATTCTGCACTAAACTCATCTGGTCCTGG
GCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGGGGGACTTTTAATGAC
AGCTTCTATTTCTTTAGGGTTTATGGAACTGTTTAGATGCTTTATCTGAT
CCCGATTAACCTTTTGAGATACCCCCCCACGGTTTAATTTGGTCTTTCCG
ACGAGGTGTTATATCCTTGATGTGTTGATGCTATATGTGCTTTCTGATGA
TGGTGCCTAAGTATATCTGACTTCTGCTGTTCATGGTCTTGTGTTTATCT
TTCTCTTTTTGACTACCTTTTGCTTGCTCCTTGTTCTGAGTGTTATTGCG
CTTTATACTATCCCCTGGCGTCCCTGTTTCTTTACACGGCTTCTTGGTCT
TCCTTTTGTTCTTGTCTTTCCCTTCATGTCCTGGTTTTCCTCTTCTATTT
TTTTTTCTTTTATTGCCCCC
CCCGCCCCCGATGCAGTGGGAGCCTGGCGGCGCCTGATTCGGAGTGGAGG
TGACCTATAGAAGTACCAAAAAATTCCCTATCTAAAACGGTTTGCATTTT
CTGTGTCCATCATTTGAAATTTTTTCTCTCAGCCTGCCTAAATTTTCTGC
CGTCATTTAGTCAGGCCATTTTGTTGCCTGGGGTATACATTCCAGGTCAT
GGCTTTATGGGCATTCGATTTGGCTTTAAGATAAATTATTCAGTACCTTT
TATTTTTGAATTATCTTGAGGAATGTCACTTCAATTTGTTTCGAGATCTT
AAAATCTCCTTCACATCTTAATGNCTGTTTTTCTGTATTATATTTTCATA
CTTATAATCAGTTAGACTTACCGCCTCTTTTCATATTGGATAGATTACAA
TTTCCAGTATCGTCAAACTATTTTAGCTTGATCTTAAAGATTATATTTCT
CTCAACAAAATATCTTCCTTCAGCTTGATCTTCCTATATTTCATCTTCCT
CTGTCTTCCTTGTTGCTCCAGTTTTGCAACTCAAAAACATATTTTATTTT
TTATTTTCATAAAAGAAACACACTTGTATAGAATAATCAAACAGTTTTAC
AAAGTTGTAATAAATAGCCACTGTTCCTTGTGCACCTGTTTTTCTAGCTC
TATTCCAAATACCTTCCTTGGGCAGAATCCCTGTGTTTGAATTATTTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_j04.g1 MSMg01no136_j04.g1 CHROMAT_FILE:
MSMg01no136_j04.g1 PHD_FILE: MSMg01no136_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:00 2005
         (612 letters)



>mm_chr1_57807742_57808752
          Length = 1011

 Score = 1089 bits (563), Expect = 0.0
 Identities = 600/614 (97%), Gaps = 5/614 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctatctaaaacggtttgcattttctgtgtccatcatttgaaattttttctctcagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cctatctaaaacggtttgcattttctgtgtccatcatttgaaattttttctctcagcctg 752

                                                                       
Query: 61  cctaaattttctgccgtcatttagtcaggccattttgttgcctggggtatacattccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 cctaaattttctgccgtcatttagtcaggccattttgttgcctggggtatacattccagg 692

                                                                       
Query: 121 tcatggctttatgggcattcgatttggctttaagataaattattcagtaccttttatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tcatggctttatgggcattcgatttggctttaagataaattattcagtaccttttatttt 632

                                                                       
Query: 181 tgaattatcttgaggaatgtcacttcaatttgtttcgagatcttaaaatctccttcacat 240
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 631 tgaattatctcgaggaatgtcacttcaatttgtttcgagatctt-aaatctccttcacat 573

                                                                       
Query: 241 cttaat--gnctgtttttctgtattatattttcatacttataatcagttagacttaccgc 298
           |||  |  | |||||||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 572 ctt--ttggcctgtttttctgtattatattctcatacttataatcagttagacttagtgc 515

                                                                       
Query: 299 ctcttttcatattggatagattacaatttccagtatcgtcaaactattttagcttgatct 358
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 514 ctcttttcatattggatagattacaatttccagtatcgtcaaattattttagcttgatct 455

                                                                       
Query: 359 taaagattatatttctctcaacaaaatatcttccttcagcttgatcttcctatatttcat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taaagattatatttctctcaacaaaatatcttccttcagcttgatcttcctatatttcat 395

                                                                       
Query: 419 cttcctctgtcttccttgttgctccagttttgcaactcaaaaacatattttattttttat 478
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 394 cttcctctgtcttccttgttgctccagtttttcaactcaaaaacatattttattttttat 335

                                                                       
Query: 479 tttcataaaagaaacacacttgtatagaataatcaaacagttttacaaagttgtaataaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttcataaaagaaacacacttgtatagaataatcaaacagttttacaaagttgtaataaa 275

                                                                       
Query: 539 tagccactgttccttgtgcacctgtttttctagctctattccaaataccttccttgggca 598
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 274 tagccactgttccttgtgcacctgtttttctagctctattccaaatcccttccttggaca 215

                         
Query: 599 gaatccctgtgttt 612
           ||||||||||||||
Sbjct: 214 gaatccctgtgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space:   602602
Effective search space used:   602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)