Query= MSMg01no136_j15.b1 MSMg01no136_j15.b1 CHROMAT_FILE:
MSMg01no136_j15.b1 PHD_FILE: MSMg01no136_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:02 2005
(657 letters)
>mm_chr1_108305852_108306908
Length = 1057
Score = 1156 bits (598), Expect = 0.0
Identities = 638/654 (97%), Gaps = 7/654 (1%)
Strand = Plus / Plus
Query: 5 gaattccttcagtcc-caatttaccagacacttagatgatacccagtaggcctgaagaga 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcagtcaacaatttaccagacacttagatgatacccagtaggcctgaagaga 264
Query: 64 tttgtggctgacctagattctaatggcctagttcacattccatcccatttcctgtcacct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtggctgacctagattctaatggcctagttcacattccatcccatttcctgtcacct 324
Query: 124 agcttcctgtggatcttttgggattcccccgtttgcaggactgtgtggtaccagttcctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcttcctgtggatcttttgggattcccccgtttgcaggactgtgtggtaccagttcctg 384
Query: 184 ctgaagagaacagtcacagatccctgccgaaacctccctgtgctgtgtattccccactgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaagagaacagtcacagatccctgccgaaacctccctgtgctgtgtattccccactgt 444
Query: 244 tccccagcagttggtatgcacagccatggctggggcaagagttcccagcttgagagccca 303
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 445 tccccagcagttggtatgcacagccacggctggggcaagagttctgtgcttgagagccca 504
Query: 304 ggaagcttctgaggagcccaactgtctgagtgaagagcaccctcactgtgtggtgacccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaagcttctgaggagcccaactgtctgagtgaagagcaccctcactgtgtggtgacccc 564
Query: 364 tcctcaccgcacaccacacactgtacatgtggccttctatggtgggatggcaccatctaa 423
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 tcctcat-gcacaccacacactgtacatgtggccttctacggtgggatggcaccatctaa 623
Query: 424 actctgccctcacggtgactcacttgaaggtggagttgatctttcctactctttgcttta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actctgccctcacggtgactcacttgaaggtggagttgatctttcctactctttgcttta 683
Query: 484 tctatatattcccatgggcctacatgtgatatagatgtgtagccaaaatgttcaaactca 543
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccatatattcccatgggcctacatgtgatatagatgtgtagccaaaatgttcaaactca 743
Query: 544 gagagattgctgataccatctcagtcactgttctattgctgtgaagagacttcatgacca 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagagattgctgttaccatctcagtcactgttctattgctgtgaagagacttcatgacca 803
Query: 604 aggcaactcttactaaaaaagaaagaaaagaaatgaaaagagaagagaagaaga 657
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 aggcaactcttactaaaaaagaaagaaa-----tgaaaagagaagagaagaaga 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_j15.g1 MSMg01no136_j15.g1 CHROMAT_FILE:
MSMg01no136_j15.g1 PHD_FILE: MSMg01no136_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:02 2005
(634 letters)
>mm_chr1_108445129_108446162
Length = 1034
Score = 1172 bits (606), Expect = 0.0
Identities = 623/634 (98%), Gaps = 9/634 (1%)
Strand = Plus / Minus
Query: 1 agtattttgggagaatagggaaggctcaagaagcaaagtcacagggaacagatgcaagca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 880 agtattttgggagaatagggaaggctcaagaagcaaagtcacaggg---------aagca 830
Query: 61 agccactgacaaagctagccttttcttcagagggaaccctcagggcccagttagcacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 agccactgacaaagctagccttttcttcagagggaaccctcagggcccagttagcacatg 770
Query: 121 tggctgcagaggaaatcctgctcagccaaacgataagaaggaaatggagtcacttcctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tggctgcagaggaaatcctgctcagccaaacgataagaaggaaatggagtcacttcctca 710
Query: 181 ccagatgcttcactcaggtagaaaaaaagcctccacttccttgtgagtgcctgcttctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ccagatgcttcactcaggtagaaaaaaagcctccacttccttgtgagtgcctgcttctgc 650
Query: 241 ttccgctcagagccaaacctgatgtcaaaacaatcacggcttccttgtcctcagggagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttccgctcagagccaaacctgatgtcaaaacaatcacggcttccttgtcctcagggagca 590
Query: 301 cttccgggctctaccaatcgatgacttgtgttcttgctgtcacctttatcccttctctca 360
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 589 cttccggactctaccaatcgatgacttgtgttcttgctgtcatctttatcccttctctca 530
Query: 361 ctggcatcctcttgagcccaacagtttaatatcagcaaatagtcaatgttggatttgcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctggcatcctcttgagcccaacagtttaatatcagcaaatagtcaatgttggatttgcat 470
Query: 421 gtctcctaagattcagaagcgccaggcttctatatgtctgcctgaatgtccagaaatagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtctcctaagattcagaagcgccaggcttctatatgtctgcctgaatgtccagaaatagc 410
Query: 481 ctagttttatgtagcaaagacctcaatggcctggattgttgtgcatttgtagagagaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctagttttatgtagcaaagacctcaatggcctggattgttgtgcatttgtagagagaatc 350
Query: 541 ttataagtatgtctttccagtgtgggtaagacactacaggtgtccccaatggagggcaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttataagtatgtctttccagtgtgggtaagacactacaggtgtccccaatggagggcaag 290
Query: 601 ttgtcaaacgctaccctggatacctgcctcgcag 634
||||||||||||||||||||||||||||||||||
Sbjct: 289 ttgtcaaacgctaccctggatacctgcctcgcag 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
