NAATCTGTGNNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCATCTGTCTTCTAGCCAGTTTTGAAGTTGCTCTG
GGTCACTCGGGACTTCAAGGTCTCAAAATTCATCTGATAGTCAGCCAGCC
AACCCTCATAGCCAAGCACCAGAAAGCCCTGGATTGAGGGCTCAACGATG
TCAAAGTCCACATCACAGCGCAGGTTGATATGCTCTGTCTTGTACCCTGC
CTTGATTTTAGCACCCCCCCCCCCACACACACACAGTTTTAGATGAGAAA
GATGAATCAGAGGTCAGCTTCAGTCTACAAGCAAGCTGGTCTTCCATGGT
CATCTCAGTGCCCAGGATGTTGTCTGTGTTACACTTCTCTGCTAATGTTA
GCACATACTCAGTCCATCTGTACTTGGTTCGCACATTGTAGTTCACTCTG
GTGGTTTCCATAGTGGCAGAGGATGAGCTAGTAAATCCCAATCCATTGTC
AGACTTCCTTTTCAAATCAAGTTTTATTAAGACAAAGCCATACCCCTTGG
TGAAGACATCCCTGGTGGACTTGCCAAGATCAGTGTATGTGGGAGGCACA
GCCACATTCTCGGAAGAGGTGACAGTGACTGCCAGTAGTAGCTATGGCAG
GGGTTGCAGCAAGGAGCCACCTTCTTCT

CTCCCAGANNCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATCAATGGGAG
GAGAGGCCCTTGGTCCTTTGAAGGCTCTATGCCCCAGTATAGGGGAATGC
CAGAGCCAGGAAGTGGGAGTGGGTGGATTGGTGAGCAGGGGAAGAGGGGA
GGNNNNNNNNNNNNNNNNNTNNNNTNNNNNNNNNNNNNNNNNNNNNNNNN
TTNNTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTT
TTCNNTTTCTNTTTNCCTTTTTTTCCTTTTTTTTTTTTTTCCCTTTCTCC
CCCCCTCCTTTTCTTTTCCTCTTCCCCCCCTCCCCTCTCCCCCTCCCTTN
TTTTTCCTTTCTACTTATTTTTTTTTCGCTTTTCCCCCCCCCCTTGCCTC
TGTCCCCCTTCTTCCTTTTCTTCTTCCTTCATTTCTTCTCTATCTCCGCC
CCCTCTTCTCTTTCCCCCCTTCTCTCTTTTTCTTCTCGTTTTCTCCCTCC
TCCCCCTTCTCCTTTTCCTTTTTTCTTCTCCCCTCTCTCTTTCCCTCTCT
TCTTATTCTTTCCTCTCTTCTTTCCTCTTTTTTTTCTCTTCCTCTTCCCC
TCCTTTTTTTTCCCCCCTCTTTCCCCCCCCCCTTTCCTTTTCTTCTTTCC
CTCTCTTTN

Query= MSMg01no136_k11.b1 MSMg01no136_k11.b1 CHROMAT_FILE:
MSMg01no136_k11.b1 PHD_FILE: MSMg01no136_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:06 2005
         (621 letters)



>mm_chr1_31792635_31793664
          Length = 1030

 Score =  986 bits (510), Expect = 0.0
 Identities = 588/618 (95%), Gaps = 11/618 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatctgtcttctagccagttttgaagttgctctgggtcactcgggacttcaagg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ggaattcatctgtcttgtagccagttttgaagttgctctgggtcactcgggacttcaagg 761

                                                                       
Query: 64  tctcaaaattcatctgatagtcagccagccaaccctcatagccaagcaccagaaagccct 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 760 tctcaaaattcatctgatagtcagccagccaaccctcatagccaagcatcagaaagccct 701

                                                                       
Query: 124 ggattgagggctcaacgatgtcaaagtccacatcacagcgcaggttgatatgctctgtct 183
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggattgagggcccaacgacgtcaaagtccacatcacagcgcaggttgatatgctctgtct 641

                                                                       
Query: 184 tgtaccctgccttgattttagcaccccc-cc-------c-cccacacacacacagtttta 234
           |||||||||||||||||||||||||||| ||       | | ||||||||||||||||||
Sbjct: 640 tgtaccctgccttgattttagcacccccgccacacacacacacacacacacacagtttta 581

                                                                       
Query: 235 gatgagaaagatgaatcagaggtcagcttcagtctacaagcaagctggtcttccatggtc 294
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 580 gacgagaaagatgaatcagaggtcagcttcagtctacaagcaagctggtcttccagggtc 521

                                                                       
Query: 295 atctcagtgcccaggatgttgtctgtgttacacttctctgctaatgttagcacatactca 354
           ||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |||
Sbjct: 520 atctcagtgcccaggctgttgtctgtgttacactactttgctaatgttagcacataatca 461

                                                                       
Query: 355 gtccatctgtacttgg-ttcgcacattgtagttcactctggtggtttccatagtggcaga 413
           |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtccatctgtacttggtttc-cagattgtagttcactctggtggtttccatagtggcaga 402

                                                                       
Query: 414 ggatgagctagtaaatcccaatccattgtcagacttccttttcaaatcaagttttattaa 473
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggatgagctggtaaatcccaatccattgtcagacttccttttcaaatcaagttttattaa 342

                                                                       
Query: 474 gacaaagccataccccttggtgaagacatccctggtggacttgccaagatcagtgtatgt 533
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 341 gacaaagccatagcccttggtgaagacatccctggtggacttgccaagatcattgtatgt 282

                                                                       
Query: 534 gggaggcacagccacattctcggaagaggtgacagtgactgccagtagtagctatggcag 593
           ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct: 281 gggaggcacagccacattctcagaagaggtgacagtggctgccagtagcagctatggcag 222

                             
Query: 594 gggttgcagcaaggagcc 611
           ||||||||||||| ||||
Sbjct: 221 gggttgcagcaagaagcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1030
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1020
Effective search space:   623220
Effective search space used:   623220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)