BAC Information

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BAC

Clone NameMSMg01-136M02
Chromosome1 (Build37)
Map Location 108,353,455 - 108,353,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneBcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136M02.T7 (MSMg01no136_m02.b1)MSMg01-136M02.TJ (MSMg01no136_m02.g1)
ACCAG342873AG342874
length692689
length of high quality
(start - end)
335 (57 - 391)341 (86 - 426)
definitionCHROMAT_FILE: MSMg01no136_m02.b1 PHD_FILE: MSMg01no136_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:14 2005CHROMAT_FILE: MSMg01no136_m02.g1 PHD_FILE: MSMg01no136_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTTGCCACCTCTATAATTGCGGCGCTAATACGACTCCTAATTGCAGAA
GAGCGGCGGAATTCTATGTTCTCGCTCTATTCCCCATTTTTAATAAGATT
ATTTGGTTCTCTGGAGCTTAACTTCTTGAGTTCTTTGTATTTATTGGATA
TTAGTTGTCTATAAGATATAGAACTAGTAAAGACCTTTTCCCAATCTATT
GGTTGCCATCTTGTCCTATTGACAGTGTCCTTTGCCTTATAGGAGATTTG
CAATTTTATGAGGTCCCATTTGTCTATTGTTGATCTTAAAGCATACGTCA
TTGGTGTTCTGCTCAGAAAAATTTCCCCTGTGCGCAAGTATTAGAGTCTT
TTCCTCACGTTCTCTTCTATTATATTCAGTGTATCTGGCTTTATGTGGAG
CTCCTTGATCCCGTTGGACTTGCCCCCCGCACAGGGAGAGAATAATGGAT
CAATTTGAATTCTTCTACAAGCTGACTGACAGATGAAATAGCCCCATTTT
GACGAACATTGTTGTCGTTTTCCACTGCATGCTGTTAGCTTTCCTTGTCA
GATACCACACGTACGTAGGCGTGTGTGTTTCATTCCTGGGCTGGCATGTT
CTTTGCCATTGACCCACTTGCCTGTCCTTGCACCAATACCTTGCAATTTT
TCATCATTACTTTGCTCTGCCACAAATGCTTTGAGCCCATAC
AAATTTACNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGTAACCTTGCT
CTCAGAAGGACAGGCAGAGAGGTAACAGGTATGATCCCTCTCCTTAACCT
ACAGAGTAAGTCCTGGTGTCAACAAAACAAAAAGTTCTTTACATTTATAA
CCTTTATACATTGACTTATAAAAACAAATTAAAAACAAAACAAACAAACA
AAGAAACGAAACAAAAAACAAAACAGCAACACAGCCTGGCAAGACGGCTC
AGCAGGGAAAAGTGCTTGCTGCCAAGGCTAATGACCTGAGTTCTGTCCCT
GTGTAGACAAGATGGAAAAAAAAACTGACTCTTGCAAGTTGTCCTCTGTT
GTACATAGACTGTGGAACATGTACCCACACAACCGTGTTCTCACACACAT
GTGCTCCAGCAAATTCTTTTTTAAATATTAAGAAATTAAAATTTTTCTAA
AATAAATAATTCTAACAAACAATGATATTTATAAAAATATTTTGAGATAT
AGTCTTTATTCTGAACCCAGACTGTCCTTAAACTCAAATCAATCCTTCTG
CTTCAGCCCCCAAGTTGCTGGTACTATAAAGAAGAGCCACGGAACGAATC
TATAAATAATTTTTTCCTTAACATTTAAACAATACTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_m02.g1 MSMg01no136_m02.g1 CHROMAT_FILE:
MSMg01no136_m02.g1 PHD_FILE: MSMg01no136_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:14 2005
         (341 letters)



>mm_chr1_108353455_108354195
          Length = 741

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgtaaccttgctctcagaaggacaggcagagaggtaacaggtatgatccctctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 336 acctgtaaccttgctctcagaaggacaggcagagaggtaacaggtatgagccctctcctt 277

                                                                       
Query: 61  aacctacagagtaagtcctggtgtcaacaaaacaaaaagttctttacatttataaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aacctacagagtaagtcctggtgtcaacaaaacaaaaagttctttacatttataaccttt 217

                                                                       
Query: 121 atacattgacttataaaaacaaattaaaaacaaaacaaacaaacaaagaaacgaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atacattgacttataaaaacaaattaaaaacaaaacaaacaaacaaagaaacgaaacaaa 157

                                                                       
Query: 181 aaacaaaacagcaacacagcctggcaagacggctcagcagggaaaagtgcttgctgccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aaacaaaacagcaacacagcctggcaagacggctcagcagggaaaagtgcttgctgccaa 97

                                                                       
Query: 241 ggctaatgacctgagttctgtccctgtgtagacaagatggaaaaaaaaa-ctgactcttg 299
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 96  ggctaatgacctgagttctgtccctgtgtagacaaggtggaaaaaaaaaactgactcttg 37

                                               
Query: 300 caagttgtcctctgttgtacatagactgtggaacat 335
           |||||| |||||||||||||||||||||||||||||
Sbjct: 36  caagttatcctctgttgtacatagactgtggaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)