CGGGGNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTGCCTACCGCCTCCTTTCCAAGTGGAGGGTCAGA
CCCCTTGGCCTGGATAGGAACTTGCTGCCTTGTTCACTGGGCTCCTTTAG
CTCATAGTAGATGGAATAATGGAATCATAAACCAGTCTCAAATGTGTTGC
TTAGAGCCCAGGGTACCACTAAATCGTTAATCCAACATGCCCTTTTCCTG
AAATCATCTTTTCATTTTCTTCCCTCTCCCTCTCTCTCTCTTCCTTATCC
AGTTTCCTGATTAGTTCGGAAGGAACAGGACATTTCTGTGTCAAGGCCTG
TGCTATGAGCCCTGTGGGAAGGAGTCAGACAGCAAGTTTGAGGGAAATCT
CATTCAGGAACAGGTCCCCAAGCTTGGCCTTCACTGTGTAACCTTCTGGA
AGACCACATTACCTCTCCTGGCTTCTGATGTCTTTTAAAACCAGATCACT
CACATCATGGTCCTTCAGTAGAATACAGAAGATATGGGGGTCATGTCCAC
TGCAGGACACTACCAACTCAGTAGACAATGTCTACTTTTAAATTCATCAA
CCAGTTAACTCATCGCACATGTGTGGAGGTCAGAGGACAACAGTTTGGGA
AACTGGTTTCTTGCCTTGCATCTGGTCTAGGCAGGGTCTTGCA

CCCCNNCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTATGTCTTTAGAG
CTTTCACCCTCTATATAGGAGACATGGATTTAAAGTCTCTTCATGTCTGT
TGACACTGGAGCTAAAGAAGCCACGGGGGTGGGGGTGGGAGTGGGGGNNN
CNNNNNNNNNANNNNNNCNNNNNCNCNNNNNTNTNNNNTNNCNNNCTNNN
TANNNTTTTTTTTTTTTTNTCTTTTCCCTCCCTTCTTCTTCACCTCCTTT
TTCTCCCCTTCTCCTTCACCNCCCCNTCNTTTTTTTTTTTTTCTCTTTAC
NACATTCCCCTCCTCCCCCCCCATCATTTTGTCTTCTTTTTCTCCCCCCC
CCCCCCTCTTCTTACTCTTATTTCATTTTTCCATTCGTATTTCTTAACCC
CCCCCCCTTTTTTTAAAATAACTTTTATCCTTTTTCTTCTCTTTTTTCTC
CTTTTTTTTTTCCTATATCTTCTGCTTCTTCCTCTTATTTCTCCCTCTTC
TTTTCTTTTTTTTTCTCCTTCTCTCCTCACATTTTTATTTTTTCCCACCC
CTCCCCTTTTTTTTATCTTTTCCTTTTCTCCTTTTTCTTCCGTCATCTCT
CTTTTTTTTCTTATTTTTTCTTTACCCCCTCTTCTCCTCTCTTCTTTTTC
CCCTCTTCCGCTTTCCCCCCATTCCCTCTTTATACTTCTTTTCTCTGTTT
TCTCTCTCTCTCTCCTCTTCTCCCTTCCTCCCACTCCTTCCN

Query= MSMg01no136_m20.b1 MSMg01no136_m20.b1 CHROMAT_FILE:
MSMg01no136_m20.b1 PHD_FILE: MSMg01no136_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:18 2005
         (640 letters)



>mm_chr1_121012690_121013729
          Length = 1040

 Score = 1183 bits (612), Expect = 0.0
 Identities = 630/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgcctaccgcctcctttccaagtggagggtcagaccccttggcctggatag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgcctacagcctcctttccaagtggagggtcagaccccttggcctggatag 264

                                                                       
Query: 65  gaacttgctgccttgttcactgggctcctttagctcatagtagatggaataatggaatca 124
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 265 gaacttgctgccttgttcactgagctcctttagctcatagtagatggaataacggaatca 324

                                                                       
Query: 125 taaaccagtctcaaatgtgttgcttagagcccagggtaccactaaatcgttaatccaaca 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 taaaccagtctcaaatgtgttgcttagagcccagggttccactaaatcgttaatccaaca 384

                                                                       
Query: 185 tgcccttttcctgaaatcatcttttcattttcttccctctccctctctctctcttcctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcccttttcctgaaatcatcttttcattttcttccctctccctctctctctcttcctta 444

                                                                       
Query: 245 tccagtttcctgattagttcggaaggaacaggacatttctgtgtcaaggcctgtgctatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccagtttcctgattagttcggaaggaacaggacatttctgtgtcaaggcctgtgctatg 504

                                                                       
Query: 305 agccctgtgggaaggagtcagacagcaagtttgagggaaatctcattcaggaacaggtcc 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agccctgtgggaaggagtcagccagcaagtttgagggaaatctcattcaggaacaggtcc 564

                                                                       
Query: 365 ccaagcttggccttcactgtgtaaccttctggaagaccacattacctctcctggcttctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaagcttggccttcactgtgtaaccttctggaagaccacattacctctcctggcttctg 624

                                                                       
Query: 425 atgtcttttaaaaccagatcactcacatcatggtccttcagtagaatacagaagatatgg 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 atgtcttttaaaaccagatcactcacatcatggcccttcagtagaatacagaagatatgg 684

                                                                       
Query: 485 gggtcatgtccactgcaggacactaccaactcagtagacaatgtctacttttaaattcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtcatgtccactgcaggacactaccaactcagtagacaatgtctacttttaaattcat 744

                                                                       
Query: 545 caaccagttaactcatcgcacatgtgtggaggtcagaggacaacagtttgggaaactggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaccagttaactcatcgcacatgtgtggaggtcagaggacaacagtttgggaaactggt 804

                                               
Query: 605 ttcttgccttgcatctggtctaggcagggtcttgca 640
           ||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttcttgccttgcatctggtctaggcagggtcttgca 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)