Query= MSMg01no136_n02.b1 MSMg01no136_n02.b1 CHROMAT_FILE:
MSMg01no136_n02.b1 PHD_FILE: MSMg01no136_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:19 2005
(676 letters)
>mm_chr1_128722754_128723829
Length = 1076
Score = 1208 bits (625), Expect = 0.0
Identities = 667/693 (96%), Gaps = 20/693 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagtctgtcacgcctgggtaggcatgaaggcaggagctaaggtttgcctgacag 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ggaattcagtctgtcaagcctgggtaggcatgaaggcaggagctaaggtttgcctgacag 243
Query: 64 gaggcagagatcaaatttcatccacacacaggaagcaaagtgagcaggaagtggggccag 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 gaggcagagatcaaatttcatccacacgcaggaagcaaagtgagcaggaagtggggccag 303
Query: 124 gctataagacttccatgcccacctccccagtgatgtattttctccagcagcctctacctc 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctataagacttccatgcccgcctccccagtgatgtattttctccagcagcctctacctc 363
Query: 184 ctaaaggctccataacctttgcaaacagcttcaccagctgagaccaaggattcaaactag 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctagaggctccataacctttgcaaacagcttcaccagctgagaccaaggattcaaactag 423
Query: 244 tgagtctatagggaagatttcattttcaaaccacagcactgtgtaaaatgccaggtgcta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgagtctatagggaagatttcattttcaaaccacagcactgtgtaaaatgccaggtgcta 483
Query: 304 tgacaggaaaagcatcggaaacattagtaacaataagacaggggacagaggtaggcagat 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgacaggaaaaacatcggaaacattagtaacaataagacaggggacagaggtaggcagat 543
Query: 364 ccctggaagctttctgtaatgaccaagttccaggccagtgagagactctgtctcaaaatt 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccctggaagttttctgtaatgaccaagttccaggccagtgagagactctgtctcaaaatt 603
Query: 424 gaaaaggtagaagatgtctgaggaacaacattcaacattcagtacctggatcccctcgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaaaaggtagaagatgtctgaggaacaacattcaacattcagtacctggatcccctcgca 663
Query: 484 tgtgcactgtacatgcatgcactcgtacactcacacatacatggacacacggagagaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgtgcactgtacatgcatgcactcgtacactcacacatacatggacacacggagagaaag 723
Query: 544 aggaagaggaagag------------atggaggaagagag--------agcaaactcatt 583
|||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 724 aggaagaggaagaggaagaggaagagatggaggaagagaggaagagagagcaaactcatt 783
Query: 584 gattttacagaaccacaatattgaagcaatatttgaatcacattgtataaaaaatgaccc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gattttacagaaccacaatattgaagcaatatttgaatcacattgtataaaaaatgaccc 843
Query: 644 acccctacacatcacagaatggaaattcaaaac 676
|||||||||||||||||||||||||||||||||
Sbjct: 844 acccctacacatcacagaatggaaattcaaaac 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_n02.g1 MSMg01no136_n02.g1 CHROMAT_FILE:
MSMg01no136_n02.g1 PHD_FILE: MSMg01no136_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:19 2005
(596 letters)
>mm_chr1_128896032_128897033
Length = 1002
Score = 629 bits (325), Expect = 0.0
Identities = 362/377 (96%), Gaps = 6/377 (1%)
Strand = Plus / Minus
Query: 226 caaagtgagttccaggacagccaagactatacagagaaaccctgtctcaaattttaatag 285
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1002 caaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaattttaatag 943
Query: 286 catagagggtagatagctactcagctctagtgatgattaagacttattttaaatataaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 catagagggtagatagctactcagctctagtgatgattaagacttattttaaatataaag 883
Query: 346 gttgtatatgtattttttgccagggactgaatgatcaaatgtggtgtagggaccctggat 405
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 882 gttgtatatgtattttttgccagggactgaatgatcaaaggtggtgtagggaccctggat 823
Query: 406 tgggattaagaacttctacagtatgtaagtcttcccagtgcttaatagctaataaatcaa 465
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 822 tgggattaagaacttctacagtatgtaagtcttcccagtgcgtaatagctaataaatcaa 763
Query: 466 ttgtcttcacagtagctttatgaggtggtagctaaagtgaaactcacctcact-g----- 519
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct: 762 ttgtcttcacggtagcttcatgaggcggtagctaaagtgaaactcacctcactcgtcaca 703
Query: 520 atgcaaactcatcacagagttacatagcttctggttggctccagtgccacagcagccaga 579
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atgcaaactcgtcacagagttacatagcttctggttggctccagtgccacagcagccaga 643
Query: 580 actcatgctcttaaata 596
|||| ||||||||||||
Sbjct: 642 actcgtgctcttaaata 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1002
Length adjustment: 10
Effective length of query: 586
Effective length of database: 992
Effective search space: 581312
Effective search space used: 581312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
