BAC Information

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BAC

Clone NameMSMg01-136N03
Chromosome1 (Build37)
Map Location 142,175,525 - 142,176,039
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136N03.T7 (MSMg01no136_n03.b1)MSMg01-136N03.TJ (MSMg01no136_n03.g1)
ACCAG342919AG342920
length717703
length of high quality
(start - end)
663 (55 - 717)626 (78 - 703)
definitionCHROMAT_FILE: MSMg01no136_n03.b1 PHD_FILE: MSMg01no136_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:19 2005CHROMAT_FILE: MSMg01no136_n03.g1 PHD_FILE: MSMg01no136_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTCCATTGCACTTAAATTCAATGAAAGACCATACAA
TGGTCGCTCAATAGTAAGAAACAATCAGGGCTAACTTTGTTTTAAGAATG
AAATACACAATGAAAAGGAAATCTTCAAAGGCATATTTAAAATAAGATGA
AAGCACAAATTTTAATTCATAAAATATTTACGTATGTATTTGTTTACTTC
AAAACCACATGCAACAGAAAATGTTTTGCTTATTTTGTAGTGAGCATTAG
AAAAAAAAAAAAGAGTCTCCGGTGGTAAGATGGTTCAGCACTAATTGTTT
ACAGGGTTCACTAGCAATGCAGAGGCTGAAGAGATGGCTCAGAATACTTG
CTGCTCCAGGTGCAGTTCACAGCACCCACAAGAGTATTAGCAACCAAAAG
CAACTTCGCTTACAGGGAAACTTTCTCCGCTTTCTGGTGATGCACATACA
TGCATGCAAACAAAATACTCAAGCATATAAATAAAATAAATAAAACCTTT
TAAAAAGTTACCTAGTGCTAGGCAGTCTTGGATTCTAAATATACCTCAGG
AAAATAACAAATTTGATTAATCTCATTGTGGAACTCAGCATGATGGAAGT
CAGTCTTCCTTCCCTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCA
CCCCCCCACGATGCAGTGGTAGCCTGGCGCCGCCTTTTCAACAATGTAGG
TGACCTATAGAATTCTCAAGGAATTCCACAAATCTCCAACTCTGTATTTT
TCTTTTCTGGGAGAAACGACTAGTTTTCGGTCTAGAGTGGGAACACTGCA
TTCTCTTTCTTGAAAAGTAAGATAATTGGAATATACAATTAATCATTGTG
ATAGGTTTATCTATCTCATGGACATTCACAGGGAAGCTTCAGTAACCCTT
TTTCTTATAAAAAAAAAGTTGCATACTAGCACTAATATAGCCTCAAAATC
AATATGGTATTCTCTGATATTTATAAGAAAGTGTAATATATTAATGTCAA
AACTGATTTTAAAAAATCAACTTATTTTCACTGGATCTGATTTGCTTCAG
ATAAATATTAATATGAAAGTAATAACTTTCCTATTCTTACAACATAAAGT
TGTTTCCCTCAGATTTGAAATTAATGTCATACAATTTCTAAGATGTATTA
AAATAATTCAGTTTAATATAATAGGAAAGTAAAACATGTAAAATAATTTC
TAATGTATCTGAAGTTAGGAAAATATAGTTAGTATATTTTGCAATTAAAA
AAAACAGAAGAAACGTGTGCACATCCTTACTTTAAACCATTTGCTATACT
TGTATTTCTAATTGATAGTTAATTGTCAATTATTCAGATTAAGAATATAA
AAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_n03.b1 MSMg01no136_n03.b1 CHROMAT_FILE:
MSMg01no136_n03.b1 PHD_FILE: MSMg01no136_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:19 2005
         (663 letters)



>mm_chr1_142175525_142176585
          Length = 1061

 Score =  934 bits (483), Expect = 0.0
 Identities = 508/517 (98%), Gaps = 2/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctccattgcacttaaattcaatgaaagaccatacaatggtcgctcaatagtaag 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 515 gaattcctccattgcacttaaattcaatgaaagaccgtacaatggtcgctcaatagtaag 456

                                                                       
Query: 65  aaacaatcagggctaactttgttttaagaatgaaatacacaatgaaaaggaaatcttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaacaatcagggctaactttgttttaagaatgaaatacacaatgaaaaggaaatcttcaa 396

                                                                       
Query: 125 aggcatatttaaaataagatgaaagcacaaattttaattcataaaatatttacgtatgta 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggcatatttaaaataacatgaaagcacaaattttaattcataaaatatttacgtatgta 336

                                                                       
Query: 185 tttgtttacttcaaaaccacatgcaacagaaaatgttttgcttattttgtagtgagcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttgtttacttcaaaaccacatgcaacagaaaatgttttgcttattttgtagtgagcatt 276

                                                                       
Query: 245 agaaaaaaaaaaaagagtctccggtggtaagatggttcagcactaattgtttacagggtt 304
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ag--aaaaaaaaaagagtctccggtggtaagatggttcagcactaattgtttacagggtt 218

                                                                       
Query: 305 cactagcaatgcagaggctgaagagatggctcagaatacttgctgctccaggtgcagttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 217 cactagcaatgcagaggctgaagagatggctcagaatacttgctgctccaggtgcggttc 158

                                                                       
Query: 365 acagcacccacaagagtattagcaaccaaaagcaacttcgcttacagggaaactttctcc 424
           |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 157 acagcacccacaagggtattagcaaccaaaagcaacttcacttacaggggaactttctcc 98

                                                                       
Query: 425 gctttctggtgatgcacatacatgcatgcaaacaaaatactcaagcatataaataaaata 484
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 97  gctttctggtgatgcacatacatgcatgcaaacaaaatgctcaagcatataaataaaata 38

                                                
Query: 485 aataaaaccttttaaaaagttacctagtgctaggcag 521
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  aataaaaccttttaaaaagttacctagtgctaggcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1061
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1051
Effective search space:   686303
Effective search space used:   686303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)