Query= MSMg01no136_n22.b1 MSMg01no136_n22.b1 CHROMAT_FILE:
MSMg01no136_n22.b1 PHD_FILE: MSMg01no136_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:23 2005
(647 letters)
>mm_chr1_131270012_131271059
Length = 1048
Score = 1199 bits (620), Expect = 0.0
Identities = 641/648 (98%), Gaps = 1/648 (0%)
Strand = Plus / Plus
Query: 1 gagcagatgaaaaccgctagtcaaa-caatgtaggccttcttggaaatgctgtttcatta 59
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcagatgaaaaccgctagtcaaaacaatgtaggccttcttggaaatgctgtttcatta 260
Query: 60 tttaaaacatattattcgtatgtggagtgctctccaaatatcctgggggttttaatcatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaacatattattcgtatgtggagtgctctccaaatatcctgggggttttaatcatg 320
Query: 120 aaagatttcactggggctgagctccagttgctaattggacagtgaaaactaaaggtacaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagatttcactggggctgagctccagttgctaattggacagtgaaaactaaaggtacaa 380
Query: 180 atttgagctcctggttttagctaatccatattctgcccttgtcatttaaaaataattctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgagctcctggttttagctaatccatattctgcccttgtcatttaaaaataattctt 440
Query: 240 tgaaaatatcttgcatgcatgcaatgtaatttcatgtcatctgtgcttactaacttcttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaatatcttgcatgcatgcaatgtaatttcatgtcatctgtgcttactaacttcttt 500
Query: 300 caacatcctccaatcttaacctatctccttcctgatgccatgtcctctgatgtcattggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacatcctccaatcttaacctatctccttcctgatgccatgtcctctgatgtcattggt 560
Query: 360 taactatatcccgagtcaagtagtgtggaccacattcttatgatgtgggaccatccaatg 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattatatcccgagtcaagtagtgtggaccacattcttatgatgtgggaccatccaatg 620
Query: 420 gagcacaggtaacctaccaatagccacatcctctaagtaaagtaactcttgggagccata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcacaggtaacctaccaatagccacatcctctaagtaaagtaactcttgggagccata 680
Query: 480 agctcccaatagctcctcaactaggagttggccctcatcccatgctggaggtttgactga 539
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 681 agctcccaatagctcctcaactaggagtcggccctcaacccatgctggaggtttgactga 740
Query: 540 cgtaattttttgcaggtcttgtgtggaaagccacagctcgtgatctcaagtgtctaccag 599
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 cgtaattttttgcagttcttgtgtggaaagccacagcccgtgatctcaagtgtctaccag 800
Query: 600 ccacattatatccagagaacagtgtttctcgggtcttcttcctgtcct 647
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 ccacattatatccagagaacagtgtttctcaggtcttcttcctgtcct 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_n22.g1 MSMg01no136_n22.g1 CHROMAT_FILE:
MSMg01no136_n22.g1 PHD_FILE: MSMg01no136_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:23 2005
(626 letters)
>mm_chr1_131439247_131440272
Length = 1026
Score = 1098 bits (568), Expect = 0.0
Identities = 613/628 (97%), Gaps = 4/628 (0%)
Strand = Plus / Minus
Query: 1 aattcattgtttttgatgggttggcaagccaatcactactggaatctactagtctctaac 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aattcattgtttttgatgggtgggcaagccaatcactactggaatctactagtctctaac 767
Query: 61 tcgcagtgctgagttacagggtcacagacacaaaccatgacacagggttcatatgtaaat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tcgcagtgctcagttacagggtcacagacacaaaccatgacacagggttcatatgtaaat 707
Query: 121 gagcgctgggcacctcaacttgaaacctcatgccaacccacaccatctagccagctctgg 180
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 706 gagtgctgggcacctcaacttgaaacctcatgtcaacccacaccatctagccagctctgg 647
Query: 181 attatgttaaatacgacggcagttttgagcacccattgttaacacgggc-gtgctttttc 239
|||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 646 attatgttaaatacgatggcagttttgagcacccattgttaacac-ggctgtgctttctc 588
Query: 240 actgctacttgtcttctgttcctttatctatgagatagaaatagatgctgttctcctcag 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 actgctacttggcttctgttcctttatctatgagatagaaatagatgctgttctcctcag 528
Query: 300 agtctagtgggatgagttgctgagctaatagaagacatacttagctcagctcaggaccct 359
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 527 agtctagtgggatgagttgttgagctaatagaagacagacttagctcagctcaggaccct 468
Query: 360 gaaaacaggtgcttaatttagccttgctgggtgaagatgagcacctgggagaagatgctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaaaacaggtgcttaatttagccttgctgggtgaagatgagcacctgggagaagatgctt 408
Query: 420 acgggagcttttcaggagtgagggcctctctgggtccacagagatgctctcctttagtgg 479
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 407 acgggagcttttcaggagtgagggcctctctaggtccacggagatgctctcctttagtgg 348
Query: 480 tttcctgtcagcacagcagccacc-tattgggtttccttctaatccaaacagaggagctt 538
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 347 tttcctgtcagcacagcagccaccat-ttgggtttccttctaatccaaacagaggagctt 289
Query: 539 tgggcatcaggaacttaagcaatactttcattgctaagcctccctcacctcaacaatcct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgggcatcaggaacttaagcaatactttcattgctaagcctccctcacctcaacaatcct 229
Query: 599 ctaacttctgtgcaagccaggaaataag 626
||||||||||||||||||||||||||||
Sbjct: 228 ctaacttctgtgcaagccaggaaataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
