CCCCCNNAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGAC
CGCGGATTCTCACCTGAGCATACCGAATGGCTGAGAAGCACCTGAAAAAA
TGTTCAGCATCCTTAATCATCAGAGAAATGCAATCAAAACAACCCTGAGA
TTCCTCCTCACACCTGTCAGAATGGCTAAGATCAAAAATTCAGGTGATAG
CAGATGTTGGCGAGAATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGT
GCGATTGCAAGCTTGTTCAACCACTCTGGAAATCAGTTTGGCGGTTCCTC
AGAAAACTGGATATAGTACTACTGGATGATCCTGCAATACCTCTCCTGGG
CATAAATCCAGAAGATGTTCCAACCGATAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTACCCACAACAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACACAAAATGTGGTACGTTTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAAGCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA
AGGAACTCACACAGTATGTACTCAATGATAAGTGGATATTAGCCCAGAAA
CTTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGA

TAAAAAANNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGCAGGATTAGGT
AATCTAAATTGTTGTTGTTAGATGGCAGAGTGACACTGGTGATCAGTGGT
CTACATTTCTATGTCACCAAAGTTCAATAATGTTATAAAATAGTGCTGTC
CAGGGTAGGTAGCCCATTCTGAGAGAAGGTATTCCCCATTTTGTGATTAT
TCCCTGGCTATTCTTTGGAAGAGTGTTTCATGACCTTGATCTGGATTTTA
TGGTCTCTTCCTAGCACTGATGTCTTATGACCTAGCTTCTAGAACTTAAG
GCCTTTTCCTACAGCTGGTGTCTTAAGGCCATTTTTTAAGTCAGGCCTGG
TTCTCAAAATGAAGACAAATGAGGTTCACACTACTCTTTCAAAATTAGGT
TTTATCTTGCCAAATATCTCTAGCTAGTGTCAAACTGACAAAAATCCTAA
CCAGGGAAATTAGCCTCTTCATTTTAAGAGAAAAGCCAAGATAAAGTATT
TTGAAATTTGATCTAGGAATATAACATGTGTAGGCCATGACTGTCTTTTA
AAAGGAGTATATAGAGTGATTTATGTTTTATTGTTCACGATTAAAATTTC
ACCTGCCATATTATGTATGATATTAAATTTCAACAGTAAATTATGGCAAT
T

Query= MSMg01no136_o10.g1 MSMg01no136_o10.g1 CHROMAT_FILE:
MSMg01no136_o10.g1 PHD_FILE: MSMg01no136_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:25 2005
         (614 letters)



>mm_chr1_113657067_113658080
          Length = 1014

 Score = 1050 bits (543), Expect = 0.0
 Identities = 597/615 (97%), Gaps = 2/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagcaggattaggtaatctaaattgttgttgttagatggcagagtgacactggtgatc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagcagaattaggtaatctaaattgttgttgttagatggcagagtgacactggtgatc 260

                                                                       
Query: 61  agtggtctacatttctatgtcaccaaagttcaataatgttataaaatagtgctgtccagg 120
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 261 agtggtctacatttctatgtcacaaaagttcaataatgtgataaaatagtgctgtccagg 320

                                                                       
Query: 121 gtaggtagcccattctgagagaaggtatt-ccccattttgtgattattccctggctattc 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gtaggtagcccattctgagagaaggtatttccccattttgtgattattccctggctattc 380

                                                                       
Query: 180 tttggaagagtgtttcatgaccttgatctggattttatggtctcttcctagcactgatgt 239
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tttggaggagtgtttcatgaccttgatctgtattttatggtctcttcctagcactgatgt 440

                                                                       
Query: 240 cttatgacctagcttctagaacttaaggccttttcctacagctggtgtcttaaggccatt 299
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 441 cttatgacctagcttctagaacttatggccttttcctacaggtggtgtcttaaggccatt 500

                                                                       
Query: 300 ttttaagtcaggcctggttctcaaaatgaagacaaatgaggttcacactactctttcaaa 359
           ||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 501 tttgaagtcaggcctggttctcaaaatgaagacaaatgcggtttatactactctttcaaa 560

                                                                       
Query: 360 attaggttttatcttgccaaatatctctagctagtgtcaaactgacaaaaatcctaacca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaggttttatcttgccaaatatctctagctagtgtcaaactgacaaaaatcctaacca 620

                                                                       
Query: 420 gggaaattagcctcttcattttaagagaaaagccaagataaagtattttgaaatttgatc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gggaaattagcctcttcattttaagagaaaagccaagataaagtattttgaaacttgatc 680

                                                                       
Query: 480 taggaatataacatgtgtaggccatgactgtcttttaaaaggagtatatagagtgattta 539
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 taggaatataacatgtataggccatggctgtcttttaaaaggagtatatagagtgattta 740

                                                                       
Query: 540 tgttttattgttcacgattaaaatttcacctgccatattatgtatgatattaaatttcaa 599
           || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggttt-ttgttcactattaaaatttcacctgccatattatgtatgatattaaatttcaa 799

                          
Query: 600 cagtaaattatggca 614
           |||||||||||||||
Sbjct: 800 cagtaaattatggca 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)