Query= MSMg01no136_p20.b1 MSMg01no136_p20.b1 CHROMAT_FILE:
MSMg01no136_p20.b1 PHD_FILE: MSMg01no136_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:32 2005
(371 letters)
>mm_chr1_126578267_126579037
Length = 771
Score = 698 bits (361), Expect = 0.0
Identities = 364/365 (99%)
Strand = Plus / Minus
Query: 5 gaattcttcctatggacctccagttactgccattcagcaccaaacaacagaaatgctaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcttcctatggacctccagttactgccattcagcaccaaacaacagaaatgctaat 510
Query: 65 tgttctcctatacatccaatgtaacaaatgccatttgctacactttgtgtgacacatgag 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 509 tgttctcctatacatccaatgtaacaactgccatttgctacactttgtgtgacacatgag 450
Query: 125 aatgtaatgcccctagtctgcatgggggtacaataattttcatctgaattatggtttgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatgtaatgcccctagtctgcatgggggtacaataattttcatctgaattatggtttgat 390
Query: 185 cttggtgttgctcatcctgacaattctgtggtgatatacatgcactattatacatcacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttggtgttgctcatcctgacaattctgtggtgatatacatgcactattatacatcacat 330
Query: 245 tgaacagcctcctttgtgcctcatccttttctctgatgagagcaaaagacagacactgat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgaacagcctcctttgtgcctcatccttttctctgatgagagcaaaagacagacactgat 270
Query: 305 caaaaatggtaggaactccaaagcaatagccctgagtattttgttgctggaaactagcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caaaaatggtaggaactccaaagcaatagccctgagtattttgttgctggaaactagcaa 210
Query: 365 tgcca 369
|||||
Sbjct: 209 tgcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_p20.g1 MSMg01no136_p20.g1 CHROMAT_FILE:
MSMg01no136_p20.g1 PHD_FILE: MSMg01no136_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:32 2005
(645 letters)
>mm_chr1_126426436_126427481
Length = 1046
Score = 1033 bits (534), Expect = 0.0
Identities = 619/652 (94%), Gaps = 19/652 (2%)
Strand = Plus / Plus
Query: 1 tttagaaa----aagagaaagg-aaaaaagg-ttgtatgctggatctgtttggcagaaca 54
|||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 198 tttagaaaaaataagag--aggaaaaaaaggtttgtatgctggatctgtttggcagaaca 255
Query: 55 gtcataagcacaactaaacaaatatacaaatcttttgaaaaaataatcatgatttctgtg 114
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 256 gtcataagcacaactaaacaaatatacaaatcttttg-aaaaataatcatgatttctgtg 314
Query: 115 aggttaacatggagttcaatttaacagggtttaaagtcaactagaagacaaattcct-gc 173
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 315 aggttaatatggagttcaatttaacagagtttaaagtcaactagaagacaaatttctggc 374
Query: 174 agtaactctgagggggttactaatattgggttaatggaagtaggaaggtctcacaagaca 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 375 agtaactctgagggggttactaatattgggttaatggaagtaggaaggtctcaaaagata 434
Query: 234 aggtctggagctgaataaaaaaagatggggtatactggtcaccagcattcacctctttct 293
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggtctggggctgaat-aaaaaagatggggtatactggtcaccagcattcacctctttct 493
Query: 294 ctttcttgatagcagctacaatgtgaccagctacctcccatttcttgccccacactttct 353
|||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 494 ctttctcgatagcagctacaatgcgaccagctacctcccattccttgtgccacactttct 553
Query: 354 ctgtgatgcctccaatggtgagccaaaaaaaaaaaaatatgaacaaaacaaaacaaaaga 413
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 554 ctgtgatgcctccaatggtgagcc--aaaaaaaaatatatgaacaaaacaaaacaaaaga 611
Query: 414 aaagcgacacaaacaacaacaaaaaccaaaaaaacacaaaaaacaac-aaaaaacaaaaa 472
||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 612 aaagcgacaca---aacaacaaaaaccacaaaaacacaaaaaacaacaaaaaaacaaaaa 668
Query: 473 caaaaaacccacaaaaaaccaaaactaaactaaa-aaaaaa-acagttccttccttatgt 530
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 669 caaaaaacccacaaaaaaccaaaactaaactaaacaaaaaacacagttccttccttatgt 728
Query: 531 ttaatttgtcatgttccttatgtttaatttttgtcccagcagggagtcaacaactaatac 590
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 729 ttaatttgtcatgttccttatgtttaatttttgtcccagcagggagtcaacaattaatac 788
Query: 591 agtcttattctatactttataaatagtaagaatattcatctaagagtctttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 agtcttattctatactttataaatagtaagaatattcatctaagagtctttg 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
