BAC Information

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BAC

Clone NameMSMg01-137A03
Chromosome1 (Build37)
Map Location 60,646,966 - 60,647,207
singlet/doubletsinglet
Overlap genenone
Upstream geneGm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027
Downstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137A03.T7 (MSMg01no137_a03.b1)MSMg01-137A03.TJ (MSMg01no137_a03.g1)
ACCAG343054AG343055
length732740
length of high quality
(start - end)
364 (42 - 405)220 (71 - 290)
definitionCHROMAT_FILE: MSMg01no137_a03.b1 PHD_FILE: MSMg01no137_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:33 2005CHROMAT_FILE: MSMg01no137_a03.g1 PHD_FILE: MSMg01no137_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGACTTTTACCTTGAAGGGATGTTGTATTTTGTCAAAGGCTTTTTCA
GCATCTAATGAGATGATCATGTGACTTTTTTCCTTGAGTTTGTTCATATA
ATGTATTATGCTGATGGATTTTCATATATTGAACTATCCCTGCATCCATG
GGATGAAGCCTACTTGATCCTGGTGAATGCTGACAAGGATATGGAGGAAG
AGAATCACTCCTCCATTGCTGGTGGGATTGTAAACTAGTACAACCAGTCT
GGAAATCAATCTCGTGGTTCCTCAGAAAACTGGAAATAGTTTTACCTGAA
GACCCAGCTATACCACTACTGGGCATATACCTAAAAGATGCCCCACCATA
CCACAGGACATGTGTTCCACTATGTTCAAAGCAGCCTTATTTGTAAATAG
CTCAGAAACCTGAAAACTACCCAGATGTCCCTCAACTGAAGAATATATCC
TGAAACTGTAGTTCATTTTACATAACAGAATACTATTCAGCTATTTAGAC
ACAGGACATCCTGAATTTTGCAGGCCAATGGTTGGAACTAGAAATATCAT
TCTGAGCGAGTTTATCCAGACCCCAGAGGACATTCCTACCATGTACTCCC
TAATAACTGGATATAACCCCCTAGTCCCAACACCTAGGATACAACCCACA
CACCCGCAGAAGTTTAACCAGCAAAAGGTCCC
ATACAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTCTGGTGATCATGGTTGGTTGTCTTAG
GAAGTCAGAGTTTAAGTCTTTCGCTCAGACAGAAGATGGAATGGAACAGG
AGGGAACATCATTGATATCCCAGTTTTGTTTGGTGTGTGTGTGTGTGTGT
GTGTGTTTGGAGTCCATACACATTTCTTCCCTCACAGTAGCTAGTTGAAA
GTTTATTTTATACATATGTAACATAGCTATAGGAGTAAGGCAGTGGAGCT
ATATACATACAATATGAACATCTATGTCTTATTTTCTTTAACAATCTCTA
GTAACTTGAATACGAGAGCCATCAGGTTGCAATTATGTGAGATGGGTGAG
ACAACTAGCACCTGACCCCTAGATGGGATGGGAACGGATATGGTGATCTA
TGGACTCTACGTACACTTGATGTCTTTGTTTTTTAACCGCTGAGGAATAT
GGCATCAGGATAATGAATCAAATTTTCTTTATCCATTTCCTCATCTGAAG
GACATTTATGTAGGTTCTACATTCTGGCTCCTATGACTTAAAGTTGCCTC
TTAACCTATTTTTAACATAACAAAGTAATCCTCTTATTACTATTCCCCTA
AAGTCCCTCTAATTTACCCTCTCTTTTATATATCTTTCTTAATCATTCTA
TAATAATATTTTCTTTTCTTTTTCCCTACATAATACATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_a03.g1 MSMg01no137_a03.g1 CHROMAT_FILE:
MSMg01no137_a03.g1 PHD_FILE: MSMg01no137_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:33 2005
         (220 letters)



>mm_chr1_60646766_60647385
          Length = 620

 Score =  364 bits (188), Expect = e-105
 Identities = 218/242 (90%), Gaps = 22/242 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctggtgatcatggttggttgtcttaggaagtcagagtttaagtctttcgctcagac 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctttctgatgatcatggttggttgtcttaggaagtcagagtttaagtctttggctcagac 260

                                                                       
Query: 61  agaagatggaatggaacaggagggaacatcattgatatcccagttttgtttggtgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagatggaatggaacaggagggaacatcattgatatcccagttttgtttggtgtgtgt 320

                                                                       
Query: 121 gtgtgtgtgtgtgtgt----------------------ttggagtccatacacatttctt 158
           ||||||||||||||||                      ||||||||||||||||||||||
Sbjct: 321 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttggagtccatacacatttctt 380

                                                                       
Query: 159 ccctcacagtagctagttgaaagtttattttatacatatgtaacatagctataggagtaa 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctcacagtagctagttgaaagtttattttatacatatgtaacatagctataggagtaa 440

             
Query: 219 gg 220
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)