Query= MSMg01no137_b18.b1 MSMg01no137_b18.b1 CHROMAT_FILE:
MSMg01no137_b18.b1 PHD_FILE: MSMg01no137_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:41 2005
(699 letters)
>mm_chr1_154307797_154308896
Length = 1100
Score = 1263 bits (653), Expect = 0.0
Identities = 686/697 (98%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 4 gaattccttagagtccctatcctttgtcagacagaccaggaaaggtacccagaggagtaa 63
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gaattcctcagagtccttatcctttgtcagacagaccaggaaaggtacccagaggagtaa 755
Query: 64 tggggcatccctcggacactgaagaaaaccggtgatgtgggttgggatgtggctcaatgg 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tggggcatccctcagacactgaagaaaaccggtgatgtgggttgggatgtggctcaatgg 695
Query: 124 tagaatacttccatagcatatacacagctctggattgaatccccagcatcaagaaaataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tagaatacttccatagcatatacacagctctggattgaatccccagcatcaagaaaataa 635
Query: 184 atgtgtgccaagcaaatgacaccacaaacccatcatggcacagcagatagctggacgcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atgtgtgccaagcaaatgacaccacaaacccatcatggcacagcagatagctggacgcct 575
Query: 244 ggacaggtgttccacagatcatctgtggccactaaaccagacactgtccacggaaacaca 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggacaagtgttccacagatcatctgtggccactaaaccagacactgtccacggaaacaca 515
Query: 304 aacatggtgctgtggtccaaatgttcctccggaatccagtcagaaggtgggacttggggc 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 514 aacatggtgctgtggtccaaatgttcctctggaatccagtcagaaggtgggacttggggc 455
Query: 364 caatgtgattgcataagactctgggcctttagaaggctgttcactcgagagggtgggcaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caatgtgattgcataagactctgggcctttagaaggctgttcactcgagagggtgggcaa 395
Query: 424 gcc-tatgggctcctcctgctatttgagggagcagcaacaagctaccaactgtgaggcag 482
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gccttatgggctcctcctgctatttgagggagcagcaacaagctaccaactgtgaggcag 335
Query: 483 aggtggagcccttatctgacaccagctctaccagcaacttgatcttgtacttcccaggct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggtggagcccttatctgacaccagctctaccagcaacttgatcttgtacttcccaggct 275
Query: 543 ccaaagccaagtccttcgcctacagatgatgtaatctaagacatattggtacagtagctc 602
||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct: 274 ccaaagccaagtccttcgcttacagatgatgtaatctaagatacattggtacagtagctc 215
Query: 603 caattaagatccatgtgcttgctggaaaagcgggctcttgatcatttatctctgtcccac 662
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 214 caattaagatccatgtgcttgctggaaaagcgggttcttgatcatttatctctgtcccac 155
Query: 663 ggtctctctgaattacactcgggtgataggggagctc 699
|||||||||||||||||||||||||| ||||||||||
Sbjct: 154 ggtctctctgaattacactcgggtgaaaggggagctc 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space: 751010
Effective search space used: 751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_b18.g1 MSMg01no137_b18.g1 CHROMAT_FILE:
MSMg01no137_b18.g1 PHD_FILE: MSMg01no137_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:41 2005
(664 letters)
>mm_chr1_154216988_154218051
Length = 1064
Score = 1166 bits (603), Expect = 0.0
Identities = 655/679 (96%), Gaps = 16/679 (2%)
Strand = Plus / Plus
Query: 1 cttacatgcagtccaatgcgacccagtaggaattaaggttagaagttataccttatgact 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cttacatgcagtccaatacgacccagtaggaattaaggttagaagttataccttatgact 246
Query: 61 cttggatctggaactgccacactggagtggcagaaacacgttcttcaagccttctggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttggatctggaactgccacactggagtggcagaaacacgttcttcaagccttctggggc 306
Query: 121 agcaaagggaatctgaagttgtgaaagtctttcatcaagaaaaagtgggtctcaggcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 307 agcaaagggaatctgaagttgtgaaagtctttcatcaagaaaaagtgggtctcgggcatg 366
Query: 181 gtcaagaaagcgcaggtcaagtacagaccaagaaaagcctgttacactccacatactact 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 gtcaagaaagcgcaggtcaagtacagaccaagaaaagcctgttacactccgcatactact 426
Query: 241 cccagcttttgtctggtt-gg-tttttttgt----------ttttg--tttttgtttttt 286
||||||||||||||||| || ||||||||| ||||| ||||||||||||
Sbjct: 427 tccagcttttgtctggttaggttttttttgttgttgttttgttttgtttttttgtttttt 486
Query: 287 cccattcctttcactactacttcctaatgagccatgagatctggtataggtggaaactgt 346
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 cccattcctttcactactacttcctaatgagccatgagatctggtgtaggtggaaactgt 546
Query: 347 gacttacttctaattgaggaacaaggcaaaagagacgggagacctgtgacatgagacagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gacttacttctaattgaggaacaaggcaaaagagacgggagacctgtgacatgagacagt 606
Query: 407 aggtccaacctgctgactctcttggctttgagaaagcaaccagttgtgctgggatagccc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aggtccaacctgctgactctcttggctttgagaaagcaaccagttgtgctgggatagccc 666
Query: 467 atatggcaaggcacagaatgcaggc-tctaccaaaccctgagaggcagagtgcatcacag 525
|| || ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct: 667 atttgacaaggcacagaatgc-ggcctctaccaaaccctgagaggcggagtgcatcacag 725
Query: 526 acacaggaagctgccacaggcaacaacaggctgagagaggaagcgcatctcagtggcacc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acacaggaagctgccacaggcaacaacaggctgagagaggaagcgcatctcagtggcacc 785
Query: 586 tcagtgagacagcagcccagatcataaaagtgctgttataaggctggctacactgctacc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tcagtgagacagcagcccagatcataaaagtgctgttataaggctggctacactgctacc 845
Query: 646 tttagcatgcaatgatgga 664
|||||||||||||||||||
Sbjct: 846 tttagcatgcaatgatgga 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
