Query= MSMg01no137_f19.b1 MSMg01no137_f19.b1 CHROMAT_FILE:
MSMg01no137_f19.b1 PHD_FILE: MSMg01no137_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:01 2005
(466 letters)
>mm_chr1_27856126_27856991
Length = 866
Score = 762 bits (394), Expect = 0.0
Identities = 444/468 (94%), Gaps = 16/468 (3%)
Strand = Plus / Plus
Query: 3 gaattcttagttgatttccataattcaagtacttgctatggctagctgcactgccctttt 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttagttgatttacataattcaagtacttgctatggctagctgcactgccctttt 262
Query: 63 cttatctttaatattttggaaaattttttaataattactttgaataaatgatagttatgt 122
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 263 cttatctttaatattttggaaaattttttgataattactttgaataaatgatagttatgt 322
Query: 123 aaaagtgaacactgactgaaaaagagcagggttgttttttgtttgtttgtttgtttgttt 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 aaaagtgaacactgactgaaaaagagcagggttgttttttgtttctttgtttgtttgttt 382
Query: 183 gtttgttttgttttgttttgtttttctttttttttgatactaggacagacagtcttgata 242
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 383 gttt----tgttttgttttgtttct-tttttttttgatactaggacagacagtcttgata 437
Query: 243 agtagcctcggctgtcctggaatttaccatatattttt----aaatttgctttgaacata 298
|||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 438 agtagcttcagctgtcctggaatttaccataga-----gcccaaatttgctttgaacata 492
Query: 299 ctgcaacctgcctgcctctgtcatctgattgctgcgattataggcaggcttgctccacca 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 ctgcaacctgcctgcctctgtcatctgattgctgcgattacaggcaggcttgctccacca 552
Query: 359 cactcagcttcaggaatgttacttatgaagaactatgtagactgagtttaacttcattga 418
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 553 cactcagcttcaggaatgtta--tatgaagaactatgtagactgagtttaacttcattga 610
Query: 419 cctttctgctcattaaaataaatttaaacagctaaggctaaatataaa 466
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cctttctgctcattaaaataaatttaaacagctaaggctaaatataaa 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_f19.g1 MSMg01no137_f19.g1 CHROMAT_FILE:
MSMg01no137_f19.g1 PHD_FILE: MSMg01no137_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:01 2005
(659 letters)
>mm_chr1_27973085_27974143
Length = 1059
Score = 1243 bits (643), Expect = 0.0
Identities = 655/659 (99%)
Strand = Plus / Minus
Query: 1 acaagacgactgtgggcttccataaatgagatgtttctatttaagaatgacacaagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 acaagacgactgtgggcttccataaatgagatgtttctatttaagaatgacacaagggaa 800
Query: 61 agcttaaaatggattgtgagttcctagtctaagaagtaaggcagtttagtattccatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agcttaaaatggattgtgagttcctagtctaagaagtaaggcagtttagtattccatata 740
Query: 121 tgatgaaaaaggtttgcttttgggtataaggaatttggctgaaatgaatcgtcatagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 739 tgatgaaaaaggtttgcttttgggtataaggaatttggctgaaatgaattgtcatagtct 680
Query: 181 gataaaggtgataaataatgattttataattgactacccttctgtatatctgaatctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gataaaggtgataaataatgattttataattgactacccttctgtatatctgaatctttg 620
Query: 241 ccatcacttttgaattaggtgagtcattttaaacctatacttgttccatgtcataaaaat 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccatcactgttgaattaggtgagtcattttaaacctatacttgttccatgtcataaaaat 560
Query: 301 gacccatgaagaacaatccataaattagaattccaatgtcctaatggattgtattatctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gacccatgaagaacaatccataaattagaattccaatgtcctaatggattgtattatctc 500
Query: 361 cttgatttttacagtaaccaagtacagatataagttgagtaacaaacaaacttgcacaga 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttgatttttacagtaaccgagtacagatataagttgagtaacaaacaaacttgcacaga 440
Query: 421 attagaatggctgcatctgcacatataatagagttttataagaatctacagatatttatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attagaatggctgcatctgcacatataatagagttttataagaatctacagatatttatt 380
Query: 481 aaaaaatatacaccatgttctgtaaagtttaagttcaatactttatcttatcacttttta 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaaaatatacaccatgttctgtaaagtttaagttcaatactttatcttatcacttttta 320
Query: 541 ttagaataaccatatacttattaagctttctaagttgatctatcattatttatgaaacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttagaataaccatatacttattaagctttctaagttgatctatcattatttatgaaacat 260
Query: 601 gtaaataaattataatgagattgtaagttcatacatttctctttataaaaataaaacat 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtaaataaattataatgagattgtaagttcatacatttctctttataaaaataaaacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
