BAC Information

Click to search

BAC

Clone NameMSMg01-137I09
Chromosome1 (Build37)
Map Location 71,586,930 - 71,587,317
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101
Downstream geneAtic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137I09.T7 (MSMg01no137_i09.b1)MSMg01-137I09.TJ (MSMg01no137_i09.g1)
ACCAG343426AG343427
length726729
length of high quality
(start - end)
402 (67 - 468)406 (72 - 477)
definitionCHROMAT_FILE: MSMg01no137_i09.b1 PHD_FILE: MSMg01no137_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:14 2005CHROMAT_FILE: MSMg01no137_i09.g1 PHD_FILE: MSMg01no137_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATGCGCGGAATTCG
TACTGTCTCTGGTATAAACTATCACTTTGAGTAAAAGTTAGGTCACTGCC
CTTCACAGGAATCTACCATCACCAAAGAAGAAAGAAGTTTCTGACCGTAG
GAGAAACCAGAATAAATACTTAGAACTATATCGAAGTTACACCCATACAC
ACGTATTTACAATGGCCTAAGGGGAAGGTGGACTATACAATAGACTAAAA
TAGGAACTATGGCAAGGGCTCGAAGCCCTTGACCCTGGCTTCTAAGATTA
GTGAATCTTAGGTGGAGCCCTTGTTGGTACCAGTTGTTAACAATGAATTC
TATCCCAGGTGGTTCCCGTTAGACCTTTTGAGTTTGCATTCCTCTGTTTT
ATGTAAGATTCCGGTTACCTCATTTGTACCTTGCGAATATGTCACCCAAC
TTCCTTCTTGTCTCTGCATAAAAAGTGCAGAAGACAAAGATGCTCGATTT
GAGAAATTACATTCAGATCCCACACAACCTCTCCTGTGTGCATCTATATG
TCAAATTCATCCGACGTTTTGCCCACCAGTGACTAGAGATCCATTCCACG
CAGACAAAGGAGCCCAGAGGATCTGCGGCAGATAGATAGATCGTTAGATT
GATAGATAGATAGATTGATCGATCGATAGATAGATAGATTGACTGATAGA
TAGACTCTTGATAGCTATGCTACACA
TTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAGAGACCAAGGAGACGTGTAATTCGAC
TCTAGCCGCTCAACAGCGCTTGCACAGGCACACATATAAAAGGCAGATGG
CTCCATTCATCCAGGACTGGGAATTTGCCAGGAGGCTGGGGGAAAAAAAC
CAAGAGTCAAGGGATTTTGGCAAGTGTGATGGAGTTGATGGGCCATGGAA
GCTAAGCAAGATAGGGAGAAAGCAAAGACCAGAGAGAGGATGTCAATCAA
CTGTGAGGACAAGGACAGTTATAATCTTGCTACAGGAGCATGCTTGCATG
GAGTAGGTTTTTAGGGCAGAGCATTTTGGAGTGTTGATATTGGGAATGTA
GCCATTGCCTAAGAAGCCAAGGAAAGGGTGTGGAGGTTATCATGAGTCAG
GACTCTGTCTGTGCTTGCTTCTCGTGTTTTGCCATAAAGATCAACTTCTA
CTTTCCAAAAGTCCCGACTGAACAACTATTATATAGTTCAAATGGAATTT
TCTATGGTGGAAATTTCATTGAACAGTACACACAGCATGAAATGTCGATT
CTAGTTAACATATTAACTAGGAGTTTCTCAAAGGTAAACACACCGGGATC
ATGTTTAAAATTTTGAAGCATCCTTTTTCATTTTTGCTCATCACTTTGGT
TCCTTTAGGTATTTAATGAGGTTAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_i09.g1 MSMg01no137_i09.g1 CHROMAT_FILE:
MSMg01no137_i09.g1 PHD_FILE: MSMg01no137_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:14 2005
         (406 letters)



>mm_chr1_71586512_71587317
          Length = 806

 Score =  696 bits (360), Expect = 0.0
 Identities = 381/388 (98%), Gaps = 1/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  gtaattcgactctagccgctcaacagcgcttgcacaggcacacatataaaaggcagatgg 79
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtaattcaactctagccgctcaacagcgcttgcacaggcacacatataaaaggcagatgg 747

                                                                       
Query: 80  ctccattcatccaggactgggaatttgccaggaggctggggg-aaaaaaaccaagagtca 138
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 746 ctccattcatccaggactgggaatttgccaggaggctgggggaaaaaaaaacaagagtca 687

                                                                       
Query: 139 agggattttggcaagtgtgatggagttgatgggccatggaagctaagcaagatagggaga 198
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 686 agggattttggcaagtgtgatggagttgatgggccatggaagctaagcaggatagggaga 627

                                                                       
Query: 199 aagcaaagaccagagagaggatgtcaatcaactgtgaggacaaggacagttataatcttg 258
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 626 aagcaaagaccagagagaggatgtcaatcaactgtgaggacaaggacagttaaaagcttg 567

                                                                       
Query: 259 ctacaggagcatgcttgcatggagtaggtttttagggcagagcattttggagtgttgata 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctacaggagcatgcttgcatggagtaggtttttagggcagagcattttggagtgttgata 507

                                                                       
Query: 319 ttgggaatgtagccattgcctaagaagccaaggaaagggtgtggaggttatcatgagtca 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 506 ttgggaatgtagccattgcctaagaagccaaggaaagggtgtggaggttatcatgagcca 447

                                       
Query: 379 ggactctgtctgtgcttgcttctcgtgt 406
           ||||||||||||||||||||||||||||
Sbjct: 446 ggactctgtctgtgcttgcttctcgtgt 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)