BAC Information

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BAC

Clone NameMSMg01-137K20
Chromosome1 (Build37)
Map Location 175,634,042 - 175,807,639
singlet/doubletdoublet
Overlap geneLOC665972, AI607873, Ifi204, EG666028, LOC100040462
Upstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik
Downstream geneMnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137K20.T7 (MSMg01no137_k20.b1)MSMg01-137K20.TJ (MSMg01no137_k20.g1)
ACCAG343540AG343541
length713717
length of high quality
(start - end)
615 (70 - 684)644 (74 - 717)
definitionCHROMAT_FILE: MSMg01no137_k20.b1 PHD_FILE: MSMg01no137_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:27 2005CHROMAT_FILE: MSMg01no137_k20.g1 PHD_FILE: MSMg01no137_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:27 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(175,634,042 - 175,634,654)(175,807,100 - 175,807,639)
sequence
ATCTATAATTGCGGCGCTAAACGACTCCTATTTTCAGAAGAGCGCGGAAT
TCATTTATATGCCATAGAAGATAGAACGGGGAGTATGGAAGTGGTGGTCT
ACGGACTATTTACCAAACTGTACTGTGAGCCTGGGTATAAGCTTAGACTT
GTCTGCTTTGAACTGAGCTCCAGTTTGGATATGTGGCAGCTGAGATCTGT
GAGGCACAGTTATATGCAGGTGTGTTCTCTAAGGCATCATAGTATTTCCT
AACAACCACTTTTAGTACTCTGGTAAGACCTGGCTGTAACAGAAAAGAAA
TTAAGTTTTAACTGTGAACTTTTTCTTACCATAGTTTTAAGAATAGTGCT
GTTTTTCTTTTCTTTGTTTCGTTTCTTTTTGCTTTTTTTAAAAATAATTT
TTCCATAGAATATATTCTTTTTTGTGTTTGTTTTTTAGAGACAGGCTTTC
TCTGTATAACCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC
TCCAACTCAGAAATCTGCCTGCCTCTGCCTCCCACGTGTTGGGATTAAAG
TCTTGCATCACCACTGCCCAGCCTAGAATATATTCCTATTGCAGTTTCTC
CTCCTGTATCTCATCCCAGATCCTCCCACCTCCCCATCTATCCAATTCTA
CCTTTCCTTTATCTCTCTAAATTTAGGAAACATTCAGGCAATANCAAATA
ACCAGAATAATAC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATGCTTGCTCAGGATGACTGTAGA
GTCAGCAAGAGAGAGCCAGGGGAAACAGTTTTTTGTTTTAAGAAAAAGTT
CCAGGCTCATCATAAATTCAGCTGTAACCATGACTAACAAAGTGAAACTA
AAACTTACCATACTGCCAAAGCCAGGAGGAACTGAAGCATAGGAGCTCCC
TAGGATTGGAGCAGGAGTCCACAGTAGGTCCAGTAAATCCAAAGGTCCTT
GTCAATGGGACTGAATCTATCCGGGCCTTGACATAAGAAGCTCTAGTCAC
AAAACAAAACCATTGCACCATTGCACCATTCCCAGGGTTTGCAGCATGGC
TTCTGATGTGTGTGTGTGTATACATACTTATATGTGTATATACACATATA
CACATATATACATGTATGTATATATACATTAATGTGTAAATAAATATATA
AGGAATCTTCTACAGTAGTAGATTTTGGTATGAACTTTTTTGAAATGTAA
ATAGTGTTAGGTACCCCTCCGTCCACTCCTTCCACTACCCTGCTCTTCCA
TTCTCCACCTGATTTAACTCTTAGGTTTTTAAAGGTTATGAATGTAGCCA
GAGAAAGAAATGTGAGAATGGCTTTCCAAGCAATGAAAAAGAAATCAACT
ACATCATAAATATTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_k20.b1 MSMg01no137_k20.b1 CHROMAT_FILE:
MSMg01no137_k20.b1 PHD_FILE: MSMg01no137_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:27 2005
         (615 letters)



>mm_chr1_175633842_175634856
          Length = 1015

 Score = 1154 bits (597), Expect = 0.0
 Identities = 609/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatagaacggggagtatggaagtggtggtctacggactatttaccaaactgtactgtgag 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatagaacggggaggatggaagtggtggtctacggactatttaccaaactgtactgtgag 260

                                                                       
Query: 61  cctgggtataagcttagacttgtctgctttgaactgagctccagtttggatatgtggcag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggggataagcttagacttgtctgctttgaactgagctccagtttggatatgtggcag 320

                                                                       
Query: 121 ctgagatctgtgaggcacagttatatgcaggtgtgttctctaaggcatcatagtatttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagatctgtgaggcacagttatatgcaggtgtgttctctaaggcatcatagtatttcc 380

                                                                       
Query: 181 taacaaccacttttagtactctggtaagacctggctgtaacagaaaagaaattaagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaaccacttttagtactctggtaagacctggctgtaacagaaaagaaattaagtttt 440

                                                                       
Query: 241 aactgtgaactttttcttaccatagttttaagaatagtgctgtttttcttttctttgttt 300
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aactgtgaacattttcttaccatagttttaagaatagggctgtttttcttttctttgttt 500

                                                                       
Query: 301 cgtttctttttgctttttttaaaaataatttttccatagaatatattcttttttgtgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtttctttttgctttttttaaaaataatttttccatagaatatattcttttttgtgttt 560

                                                                       
Query: 361 gttttttagagacaggctttctctgtataaccctggttgtcctggaactcactctgtaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttttagagacaggctttctctgtataaccctggttgtcctggaactcactctgtaga 620

                                                                       
Query: 421 ccaggctggcctccaactcagaaatctgcctgcctctgcctcccacgtgttgggattaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaggctggcctccaactcagaaatctgcctgcctctgcctcccacgtgttgggattaaa 680

                                                                       
Query: 481 gtcttgcatcaccactgcccagcctagaatatattcctattgcagtttctcctcctgtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcttgcatcaccactgcccagcctagaatatattcctattgcagtttctcctcctgtat 740

                                                                       
Query: 541 ctcatcccagatcctcccacctccccatctatccaattctacctttcctttatctctcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcatcccagatcctcccacctccccatctatccaattctacctttcctttatctctcta 800

                        
Query: 601 aatttaggaaaca 613
           |||||||||||||
Sbjct: 801 aatttaggaaaca 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no137_k20.g1 MSMg01no137_k20.g1 CHROMAT_FILE:
MSMg01no137_k20.g1 PHD_FILE: MSMg01no137_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:27 2005
         (644 letters)



>mm_chr1_175807100_175808143
          Length = 1044

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatgcttgctcaggatgactgtagagtcagcaagagagagccaggggaaacagttttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 540 ctgatgcttgctcaggatgactgtagaggcagcaagagagagccaggggaaacagttttt 481

                                                                       
Query: 61  tgttttaagaaaaagttccaggctcatcataaattcagctgtaaccatgactaacaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgttttaagaaaaagttccaggctcatcataaattcagctgtaaccatgactaacaaagt 421

                                                                       
Query: 121 gaaactaaaacttaccatactgccaaagccaggaggaactgaagcataggagctccctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaaactaaaacttaccatactgccaaagccaggaggaactgaagcataggagctccctag 361

                                                                       
Query: 181 gattggagcaggagtccacagtaggtccagtaaatccaaaggtccttgtcaatgggactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gattggagcaggagtccacagtaggtccagtaaatccaaaggtccttgtcaatgggactg 301

                                                                       
Query: 241 aatctatccgggccttgacataagaagctctagtcacaaaacaaaaccattgcaccattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aatctatccgggccttgacataagaagctctagtcacaaaacaaaaccattgcaccattg 241

                                                                       
Query: 301 caccattcccagggtttgcagcatggcttctgatgtgtgtgtgtgtatacatacttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 caccattcccagggtttgcagcatggcttctgatgtgtgtgtgtgtatacatacttatat 181

                                                                       
Query: 361 gtgtatatacacatatacacatatatacatgtatgtatatatacattaatgtgtaaataa 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtgtatatacatatatacacatatatacatgtatgtatatatacattaatgtgtaaataa 121

                                                                       
Query: 421 atatataaggaatcttctacagtagtagattttggtatgaacttttttgaaatgtaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atatataaggaatcttctacagtagtagattttggtatgaacttttttgaaatgtaaata 61

                                                                       
Query: 481 gtgttaggtacccctccgtccactccttccactaccctgctcttccattctccacctgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gtgttaggtacccctccgtccactccttccactaccctgctcttccattctccacctgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)