NNNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTACTTTCCAAGGATAGTTAGACCTGAATGTGGCAGA
ATCCAAGTTCTGTGGCTAAGTCATTGCCACAGATATTCATTTGGGCCATA
CAGAGATGCTGAGAAGCAGTCTAGTGGGCTTTCTGTGTTCTAAATATCTC
CAGTTACTTCTATTTTCTAGCAGATGACATAATTTTATTCTTTTTTTGCA
AAATAATCCTATCTCTCTCTTTCTCTCTCTCTTTCTATCTTCCATGATTT
TATGTATAATGATTTTTCTTCATCTATTCTTTGATTGATAAACACCTAAC
TGATTCAATAACTAGGCAAATGTCAATATTGTCAAAAATAAACATGGAAA
GGCTGTAGGCATCTCTGTAGTAGATGACTTATGTTGCTTCTAGCATATTC
CCAGGCACTATATAGATGATACTATGCTGGCTCTATTTTTAGTTATTGAG
GATCCTCCATGCTGATTTCCATGGAGAATGTACTACTTTAAATCCCCATC
AGCAGTATATAGGGTTCCTTTCTCCTGTGTTCCCACAGGCATTTGTTATT
TGTTTCCTTTGGGTTTGCTGTTGCTGTTTGTTTGTTTGTTTTCTTATAAG
CCTTATTTTTTCTTTTTTTGTTTTTAAGAGAAAACAAAACCTAATACTTT
GAAAC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTAGTCAATAACGCTGAGATGCGG
AAGACAGCTGAGTGACCTCTGATTGCATCTGTGCCTCTTGGTTTATTGAG
GGATTCAAGACTTGATGGTAAAAATCATCATATTGGTTTTCAAAGCTGCA
TTTCTGTAAGTTTGTATAAACTGGAAAGAATATTGCTTCACTTGTGCAAC
GCGGAAAGACCATCCAGTGCACATTAAGTCTATATGATCTTGGTTGAAGG
AAGACATTTTGACAACGGATACCACTGAGATGATGCAGGGGAAGGGAGAA
GGGTTGATTTGGATGCCATGGGTTACAAGACCCAGCTAGATCTTTTTTTC
CACCAGGAGAGACTTTAGGGCAAGAACATGAAGAAGCATGGTGATAAAAA
GACTGTCACCAAGTGTGCACTTTAAGACCTTCATGAAAATTGCATTCAAG
ATTGACAGTGGTCCAGCCTACCCTCCCCAGCTCCACCCACAGCCTCACCA
ATGCAGGATACTTATGCTTCCAAAGGGGTCATCTTATGGATGGAGGCAGC
ACATAATGAAGAAACTAGAGTGAAAGAGATTTGTGTTTCTAAGCTTATAT
GAGACACGCCAACATTTCAGGACACCCCTAGAGCTGAATCCAGGGTGAGT
AACTGGGCAAGAATCTGTCTCAA

Query= MSMg01no137_m17.b1 MSMg01no137_m17.b1 CHROMAT_FILE:
MSMg01no137_m17.b1 PHD_FILE: MSMg01no137_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:37 2005
         (637 letters)



>mm_chr1_169913132_169914168
          Length = 1037

 Score =  267 bits (138), Expect = 2e-75
 Identities = 141/142 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttactttccaaggatagttagacctgaatgtggcagaatccaagttctgtgg 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttactttgcaaggatagttagacctgaatgtggcagaatccaagttctgtgg 263

                                                                       
Query: 64  ctaagtcattgccacagatattcatttgggccatacagagatgctgagaagcagtctagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaagtcattgccacagatattcatttgggccatacagagatgctgagaagcagtctagt 323

                                 
Query: 124 gggctttctgtgttctaaatat 145
           ||||||||||||||||||||||
Sbjct: 324 gggctttctgtgttctaaatat 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_m17.g1 MSMg01no137_m17.g1 CHROMAT_FILE:
MSMg01no137_m17.g1 PHD_FILE: MSMg01no137_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:37 2005
         (591 letters)



>mm_chr1_170026476_170027466
          Length = 991

 Score = 1120 bits (579), Expect = 0.0
 Identities = 588/591 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtagtcaataacgctgagatgcggaagacagctgagtgacctctgattgcatctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 791 tctgtagtcaataacgctgagatgcggaagacagctgagtgacctctggttgcatctgtg 732

                                                                       
Query: 61  cctcttggtttattgagggattcaagacttgatggtaaaaatcatcatattggttttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cctcttggtttattgagggattcaagacttgatggtaaaaatcatcatattggttttcaa 672

                                                                       
Query: 121 agctgcatttctgtaagtttgtataaactggaaagaatattgcttcacttgtgcaacgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agctgcatttctgtaagtttgtataaactggaaagaatattgcttcacttgtgcaacgcg 612

                                                                       
Query: 181 gaaagaccatccagtgcacattaagtctatatgatcttggttgaaggaagacattttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaaagaccatccagtgcacattaagtctatatgatcttggttgaaggaagacattttgac 552

                                                                       
Query: 241 aacggataccactgagatgatgcaggggaagggagaagggttgatttggatgccatgggt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aacggagaccactgagatgatgcaggggaagggagaagggttgatttggatgccatgggt 492

                                                                       
Query: 301 tacaagacccagctagatctttttttccaccaggagagactttagggcaagaacatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tacaagacccagctagatctttttttccaccaggagagactttagggcaagaacatgaag 432

                                                                       
Query: 361 aagcatggtgataaaaagactgtcaccaagtgtgcactttaagaccttcatgaaaattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagcatggtgataaaaagactgtcaccaagtgtgcactttaagaccttcatgaaaattgc 372

                                                                       
Query: 421 attcaagattgacagtggtccagcctaccctccccagctccacccacagcctcaccaatg 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 attcaagattgacagtggtccagcctaccctccccagctccatccacagcctcaccaatg 312

                                                                       
Query: 481 caggatacttatgcttccaaaggggtcatcttatggatggaggcagcacataatgaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caggatacttatgcttccaaaggggtcatcttatggatggaggcagcacataatgaagaa 252

                                                              
Query: 541 actagagtgaaagagatttgtgtttctaagcttatatgagacacgccaaca 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actagagtgaaagagatttgtgtttctaagcttatatgagacacgccaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)