Query= MSMg01no138_a22.b1 MSMg01no138_a22.b1 CHROMAT_FILE:
MSMg01no138_a22.b1 PHD_FILE: MSMg01no138_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:58 2005
(680 letters)
>mm_chr1_24404303_24405383
Length = 1081
Score = 1241 bits (642), Expect = 0.0
Identities = 669/680 (98%), Gaps = 5/680 (0%)
Strand = Plus / Plus
Query: 6 gaattcattgcttgtttcctggtggtgctaatttaggaaggtagagg-ctcaagacccag 64
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 206 gaattcattgcttgtttcctggtggtgctaatttaggaaggtagaggacacaaaacccag 265
Query: 65 aggctgtacttatgaaggtcatatctagtaagacttttctcctcttcttctctacttccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggctgtacttatgaaggtcatatctagtaagacttttctcctcttcttctctacttccc 325
Query: 125 atctgtgataggacaggtgactcttccacatgttcctactgctaggatgttctgccaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atctgtgataggacaggtgactcttccacatgttcctactgctaggatgttctgccaccc 385
Query: 185 tgtcttgtagctgttttcccaagattaaaaccattcatcttggtgtacaacttctgggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtcttgtagctgttttcccaagattaaaaccattcatcttggtgtacaacttctgggga 445
Query: 245 caagagggaatcaaagcaaatttcttctttatattatatatgtatgtttgtctcattcgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caagagggaatcaaagcaaatttcttctttatattatatatgtatgtttgtctcattcgg 505
Query: 305 aaaagaataatgagaagagacgagacctacaaaaggttttgctatttataagaggcattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaagaataatgagaagagacgagacctacaaaaggttttgctatttataagaggcattt 565
Query: 365 ttatcatgattgttaagatagcttaatctctattttgtccatggacaagcccaagtcagt 424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 566 ttatcatgattgttaagatagcttaatgtctattttgtccatggacaagcccaagtcagt 625
Query: 425 gaagaaaagacagagaaatagatagatgttgggaaggccaaagaaaaagagcagagaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaagaaaagacagagaaatagatagatgttgggaaggccaaagaaaaagagcagagaaag 685
Query: 485 gctggccactcagggaagcagagctgcctgaaaaaatgctgggaccaactgagcctcctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gctggccactcagggaagcagagctgcctgaaaaaatgctgggaccaactgagcctcctg 745
Query: 545 gaaaggatagtcttcatcttactgagctgcctgtaagttgtgtagtgagctccaggttcc 604
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaaaggacagtcttcatcttattgagctgcctgtaagttgtgtagtgagctccaggttcc 805
Query: 605 aggttttatgagtgtatg----agttggcattggtgatacagctggccttgagtcacctc 660
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aggttttatgagtgtatgtatgagttggcattggtgatacagctggccttgagtcacctc 865
Query: 661 tctaagtaaccaaactatat 680
||||||||||| ||||||||
Sbjct: 866 tctaagtaacccaactatat 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_a22.g1 MSMg01no138_a22.g1 CHROMAT_FILE:
MSMg01no138_a22.g1 PHD_FILE: MSMg01no138_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:58 2005
(649 letters)
>mm_chr1_24487583_24488629
Length = 1047
Score = 1180 bits (610), Expect = 0.0
Identities = 639/649 (98%), Gaps = 2/649 (0%)
Strand = Plus / Minus
Query: 1 ttttcaccagcattgcaaaacttatttctttgtgttgaaatcttaatagtacaaggttca 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 847 ttttcaccagcattgcaaaacttattcctttctgttgaaatcttaatagtacaaggttca 788
Query: 61 aagttacgctcagcctaagttctgcagcaggggagtgttctggtcttcacctgcatcacc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 787 aagttacgctcagcctaagttctgcagcaggggagtgttctggtcatcacctgcatcacc 728
Query: 121 acacgttctgaagtggcaagacttgcaaaggagcttaagtcacaagaactgacgagaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 acacgttctgaagtggcaagacttgcaaaggagcttaagtcacaagaactgacgagaaat 668
Query: 181 ggctgatgccaagcgtgaggcgatatgatctgtgttctagaacaagtggcccaaggatga 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 667 ggctgatgccaagcgtgaggcgatatgatctgtggtctagaacaagtggcccaaggatga 608
Query: 241 cttcatcactgttacaatagtaaggaaggctgaggggctgctctcatgtctcatgtagac 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttcatcactgttacaataggaaggaaggctgaggggctgctctcatgtctcatgtagac 548
Query: 301 ccatttgtgagtgacctggttagaaaaactaagactacttacaagagaatggtaagagta 360
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccatttgtgagtgacctggtcaggaaaactaagactacttacaagagaatggtaagagta 488
Query: 361 gaagcaggagtcacaattgtaagattcaaaacaaaattcttaaatagttgagcggaagct 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 487 gaagcaggagtcacaattgtaagattcaaa-caaaattcttaaatagttgagcggaagct 429
Query: 421 gtaacagcgtggatcctggaactaagttccatttattatttatgaacattttcaaacgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtaacagcgtggatcctggaactaagttccatttattatttatgaacattttcaaacgtt 369
Query: 481 cagcttacgttgctttgttcagaaaattgtaggaattccttttttttcaacagctcacta 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 368 cagcttacgttgctttgttcagaaaattgtaggaattccttttttt-caacagctcacta 310
Query: 541 aaaaataaatctccctcgagagtctttganagtttggatcatttaaaaggcatattatta 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 309 aaaaataaatctccctcgagagtctttgaaagtttggatcatttaaaaggcatattatta 250
Query: 601 attttactgcgttaataaccattatgatctagtagtgaggataatattt 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attttactgcgttaataaccattatgatctagtagtgaggataatattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1047
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1037
Effective search space: 662643
Effective search space used: 662643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
