Query= MSMg01no138_e24.b1 MSMg01no138_e24.b1 CHROMAT_FILE:
MSMg01no138_e24.b1 PHD_FILE: MSMg01no138_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:19 2005
(305 letters)
>mm_chr1_129450786_129451491
Length = 706
Score = 511 bits (264), Expect = e-149
Identities = 288/296 (97%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 5 gaattctagaa-atccacggctacacagagaaactctgtcttg-aaaaccaaacaaccaa 62
||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 556 gaattctagaacaaccagggctacacagagaaactctgtcttgaaaaaccaaacaactaa 497
Query: 63 acaactaaacaacccaaaacaaaatgagatggacaactcttgaagaa-aacattgggctt 121
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 496 acaactaaacaacccaaaacaaaatgagatggaaaactcttgaagaataacattgggctt 437
Query: 122 ttacctccagcttccatacatgtagacatgcatcttacacatacatacatacaaaggaag 181
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 ttacctccagcttccatacatgtagtcatgcatcttacacatacatacatacaaaggaag 377
Query: 182 gatgccccttagtgtgattttacatgggaacaggacatctgaaccctcttctgttagatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatgccccttagtgtgattttacatgggaacaggacatctgaaccctcttctgttagatt 317
Query: 242 agttcttatcccagaatcaggacatactatgattcagttatagggcaaaggaaact 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agttcttatcccagaatcaggacatactatgattcagttatagggcaaaggaaact 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space: 206312
Effective search space used: 206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_e24.g1 MSMg01no138_e24.g1 CHROMAT_FILE:
MSMg01no138_e24.g1 PHD_FILE: MSMg01no138_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:19 2005
(561 letters)
>mm_chr1_129371730_129372686
Length = 957
Score = 988 bits (511), Expect = 0.0
Identities = 543/561 (96%), Gaps = 13/561 (2%)
Strand = Plus / Plus
Query: 1 taggggtcttgatccccaagacccaactggtggaaagagaggacaaacttctacacattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggggtcttgatccccaagacccaactggtggaaagagaggacaaacttctacacattg 260
Query: 61 tcctcagcccccacacacatacaactaaatgtacaggaaataaaactacatctttaaaat 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcagcccccacacaca----actaaatgtacaggaaataaaactacatctttaaaat 316
Query: 121 ttttgtttaaatacagggtggtcagtcagtcacatggctgtttggtttgaaacagcatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 317 ttttgtttaaatacagggtggtcagtcagtcacatggctgtttggtttgaaatagcatgt 376
Query: 181 catatatcccaggctggccttgaacttgctatgtggacaagggtgaccttggactcctga 240
||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 377 catgtatcccaggctggccttgaacttgcta---------gggtgaccttggactcctga 427
Query: 241 ccctcctgtgttttcacagatgctgggatttcaggtgtgtaccctcatgcagtgctagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccctcctgtgttttcacagatgctgggatttcaggtgtgtaccctcatgcagtgctagaa 487
Query: 301 tctacgtgcttgacaggctctgaaccagctcggcccagccctgaaatgtggttggtaaga 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tatacgtgcttgacaggctctgaaccagctcggcccagccctgaaatgtggttggtaaga 547
Query: 361 gtgtttggtcacatgcaaagcagcagacattggcctcggccctgcacacacatgttcaca 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 548 gtgtttggtcacatgcaaagcagcagacattggcctcggccctgcacatacatgttcaca 607
Query: 421 agtagggacctgagggtgggggtagagcagagacgcagactttgctttgactgacaactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agtagggacctgagggtgggggtagagcagagacgcagactttgctttgactgacaactc 667
Query: 481 tgttggtacattcttgatttgtagtcactgcgtgacaattttggaatagccaaacacact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgttggtacattcttgatttgtagtcactgcgtgacaattttggaatagccaaacacact 727
Query: 541 gagaaacgtgcaccaatggca 561
||||||| |||||||||||||
Sbjct: 728 gagaaacatgcaccaatggca 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 957
Length adjustment: 10
Effective length of query: 551
Effective length of database: 947
Effective search space: 521797
Effective search space used: 521797
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
