BAC Information

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BAC

Clone NameMSMg01-138H13
Chromosome1 (Build37)
Map Location 131,506,991 - 131,507,520
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55, Zp3r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138H13.T7 (MSMg01no138_h13.b1)MSMg01-138H13.TJ (MSMg01no138_h13.g1)
ACCAG344128AG344129
length1,229696
length of high quality
(start - end)		---519 (87 - 605)
definitionCHROMAT_FILE: MSMg01no138_h13.b1 PHD_FILE: MSMg01no138_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:31 2005CHROMAT_FILE: MSMg01no138_h13.g1 PHD_FILE: MSMg01no138_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTTTTTNTCNNNTTCTTTTTTTNTTTGTTTTCCGCTCTTTTTTTTA
TCTTTTTTACTTTCTCCCAGAAGAGANCCCGCCGCTCCCTTTTTTTTTTT
TTTCTCTTCTTTTCTCCTCTCCTCCCCCTCCCCCCCTCGCCCCTCTCTTC
TCCGCCCCTACCCCTCTCCTCTCTCATTTCTTTCTCCCCTTCACCCCGTT
CCACACACATTCACCCTCTTCCCGCCCTCAACACAGACACACCTTTCCAA
CACNCACACTACAACACCCCTTAATTTTATTTATATCACATACCCCACTC
ACACCAACTTATAATCTACCTATTATACTATACAACATAATTATCCAACC
ACAATACCATTATATTTAATATATTATACAATATAGAGCGCGGTTAGATT
CTTCTCGACAACGACTGAGCACCATGATCGTGCTCTGAGCGACACACAAC
ATTGAGCTATCAGCACCGACGCACGCGAGCGCGAGATTCGCGAGGCGCGG
AAGCAGGCAGGGTGAGGTAGACCGACTCACCATCGGTGCTCAGCGGTACG
GCGCGGCGTGTGGGGTGTGGCGGGTACAGAGGAGTCGGGAGAGATGAGCG
GCGCGGAAGAGGTGTATAGAATCCGGTGATAGTAAACGATGATAGAATAG
ATCGGATAAACGTGGCGAAACACGAGTGAGAACATACGATGATAGAAGTA
AGAATAATGGGCTGATATGATGAGGGAAGAGAGGAGTGAATGCAGACAGT
ATAAGTGAGGACGCGGCGCTGCGTATAGTATGTGTAGCTATATTGTATGT
TTGCGAGGGAGATAGACAGAGATGACAGAATTCGAGAGTAGATAATATAC
GCTAAGGGGTAGCGTGTGAAGATAGATAATATAAGAACGCAGTCAGGCAC
ACTTACAGACAACACAGAACTATTAAACATAATTAGCACGACACCCAACA
ACATAGAGCGCGTGGAGTAATATGAGAGCACAACATCACCAATGACGAGA
ACAGGCTACATCGATGTAGCACACAATACTATAACCGAGAAGCGCAATAT
ATTCGGTACTCAACGTATGAGAATGAAGGGGGGAGATTGATGATTATAGC
GAAGACAGCGAAATAGATAGACGAGATAAAATGAGAGGCAGAAGTGAGAA
GAGAGCAAAGAGAGAAAGTGCAGGGAGAAGAATGAATAAATATATATAGA
CCACGCACGACATATAACACACCTCCTAT

TTTCTTTNNTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGATCAAGCTT
GGCCCTCATGCTTGTTCTACTAAGGTTTTACTGACTAGAGCACTTCCCTG
GGCCCCAAACCTTTCTTTATGAAGGGAATGTAAAGGGCATTTTGGAAAAG
GAAAACCATTTTCTAAAATCACAAATGACTTGAAAGTGTTGACTAGACTT
CTGAATCTCTTGGCTTCGACTGTTAGGGCAAGTGCCATGCATTTGGTTGC
TCAACAAAATAACTTGATTTTCTCAAAATCTAGAATCTGGGCATCCAAGA
CCATGGTGTAGTGGCAGGGTACTTTCTCTCCTTCTTCTAGAACTTGGACA
TACACAGCCTTTGTCTCTGTCTTCCCAAGTTCTCTCTCTCTCTCTGTCTC
TCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTGTGTC
TCTCTCTGTCCCTCTCTCTGTCTCTCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCTCTCTTGCCCACCCTATCATGACACATGCTGTCCTCTTTATTTT
CTAAATGTTCTAATGTTCATGTTCTAAATTTCTAAGTGTTCTAAATGGAG
TTTAGGCAGTGACACACTGGATANCACATTCATCTGTCATCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_h13.g1 MSMg01no138_h13.g1 CHROMAT_FILE:
MSMg01no138_h13.g1 PHD_FILE: MSMg01no138_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:31 2005
         (519 letters)



>mm_chr1_131506802_131507720
          Length = 919

 Score =  862 bits (446), Expect = 0.0
 Identities = 505/536 (94%), Gaps = 23/536 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggatcaagcttggccctcatgcttgttctactaaggttttactgacta--------- 51
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 190 aaaggatcaagcttggccctcatgcttgttctactaaggttttactgactactaaggttt 249

                                                                       
Query: 52  --gagcacttccctgggccccaaacctttctttatgaagggaatgtaaagggcattttgg 109
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagagcacttccctgggccccaaacctttctttatgaagggaatgtaaagggcattttgg 309

                                                                       
Query: 110 aaaaggaaaaccattttctaaaatcacaaatgacttgaaagtgttgactagacttctgaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaaggaaaaccattttctaaaatcacaaatgacttgaaagtgttgactagacttctgaa 369

                                                                       
Query: 170 tctcttggcttcgactgttagggcaagtgccatgcatttggttgctcaacaaaataactt 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctcttggcttcgactgttagggcaagtgccatgcatttggttgctcaacaaaataactt 429

                                                                       
Query: 230 gattttctcaaaatctagaatctgggcatccaagaccatggtgtagtggcagggtacttt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gattttctcaaaatctagaatctgggcatccaagaccatggtgtagtggcagggtacttt 489

                                                                       
Query: 290 ctctccttcttctagaacttggacatacacagcctttgtctctgtcttcccaagttctct 349
           || |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 490 ctgtccttcctctagaacttggacatacacagcctttgcctctgtcttcccaagttctct 549

                                                                       
Query: 350 ctctctctctgtctctctctgtctctctgtctctctgtctct--ctctctctgtctctct 407
            |||||||  |||||||||||||||||||||||||| |||||  ||||||||||||||||
Sbjct: 550 gtctctct--gtctctctctgtctctctgtctctctctctctgtctctctctgtctctct 607

                                                                       
Query: 408 ctgtgtctctctctgtccctctctctgtctctctccctccctccctccc----tccctcc 463
           |||| |||||||||||| ||||| |   ||| |||||||||||||||||    |||||||
Sbjct: 608 ctgtctctctctctgtctctctc-c---ctccctccctccctccctcccatcctccctcc 663

                                                                   
Query: 464 ctccctctctcttgcccaccctatcatgacacatgctgtcctctttattttctaaa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctccctctctcttgcccaccctatcatgacacatgctgtcctctttattttctaaa 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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