Query= MSMg01no138_i22.b1 MSMg01no138_i22.b1 CHROMAT_FILE:
MSMg01no138_i22.b1 PHD_FILE: MSMg01no138_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:38 2005
(607 letters)
>mm_chr1_160579313_160580318
Length = 1006
Score = 1129 bits (584), Expect = 0.0
Identities = 599/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 4 gaattcaccgcttccttcccaaagctgactaacagcttttggcaaaaactgaatactgta 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaccgcttccatgccaaagctgactaacagcttttggcaaaaactgaatactgta 263
Query: 64 cctacatcaaatctaaatttaacatgaacctaattagctagggacctcaagccgacactg 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 264 cctacatcaaatctaaatttaacacgaacctaattagctagggacctcaagcccacactg 323
Query: 124 atttgttagaaaacaagcccacgaaaaggggattagcttaagaaattataacattgtgtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttgttagaaaacaagcccacgaaaaggggattagcttaagaaattataacattgtgtt 383
Query: 184 atctatcaatttttaaaaggcattggggcattgatgccattttatttctgtctcctctaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atctatcaatttttaaaaggcattggggcattgatgccattttatttctgtctcctctaa 443
Query: 244 cttccaaatctgcatagtcataattgatgaacaaaaacatcacctggaggcacttggggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttccaaatctgcatagtcataattgatgaacaaaaacatcacctggaggcacttggggg 503
Query: 304 aaaggtttaattctgtttggtaggcaatgctttatgaagcaggcaggaaattggaacact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaggtttaattctgtttggtaggcaatgctttatgaagcaggcaggaaattggaacact 563
Query: 364 gcatttttagaaaagaaaaatgtcaacaaggactgcagaaaaagtaagcatttttttttt 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcatttttagaaaagaaaaatgtcaacaaggactgcagaaaaagtaagcattttttttt- 622
Query: 424 ctgggtaagtgtcaattaaacaaaaatctgcttccagaagacatcgttccttgggtaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgggtaagtgtcaattaaacaaaaatctgcttccagaagacatcgttccttgggtaccc 682
Query: 484 cagctgttggcactttatgaagtggtcagtgggcatctgatgacagatactccaccacag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagctgttggcactttatgaagtggtcagtgggcatctgatgacagatactccaccacag 742
Query: 544 ccttggatattgctctccagggactggctgcagggtctgatgatagcaaagaggcactat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccttggatattgctctccagggactggctgcagggtctgatgatagcaaagaggcactat 802
Query: 604 ctct 607
||||
Sbjct: 803 ctct 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_i22.g1 MSMg01no138_i22.g1 CHROMAT_FILE:
MSMg01no138_i22.g1 PHD_FILE: MSMg01no138_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:38 2005
(551 letters)
>mm_chr1_160732073_160733023
Length = 951
Score = 888 bits (459), Expect = 0.0
Identities = 468/471 (99%)
Strand = Plus / Minus
Query: 1 cacgggcctcaccataattaaagaggacatacactttcgatgcattgacagctggtcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cacgggcctcaccataattaaagaggacatacactttcgatgcattgacagctggtcatg 412
Query: 61 ctattttgaggagatggtgtaaggtcagtgacagctcaatgcagtgaagggaggtggaac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctattttgaggagatggtgtaaggtcagtgacagctcaatgcagtgaagggaggtggaat 352
Query: 121 tgtttgatggattgggccattgaagtggaaggtataaagatactttggattttgggggac 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 351 tgtttgatggattgggccattgaagtggaaggtataaagatactttggactttgggggac 292
Query: 181 ttttagaaaatgtaaagtccagagcaaggacattttatagacaaatccaggcaattggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttttagaaaatgtaaagtccagagcaaggacattttatagacaaatccaggcaattggaa 232
Query: 241 gttactgtcagagtttttgttgttattgttgtctttgtttttttaagatttattttttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gttactgtcagagtttttgttgttattgttgtctttgtttttttaagatttattttttta 172
Query: 301 ttatgtgcattggtgctctgcctgtgcaaagggccagatcctctggaactggagttacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttatgtgcattggtgctctgcctgtgcaaagggccagatcctctggaactggagttacag 112
Query: 361 acaactctgagctgccatatgggtacttcctctggaagagcagccagtgctcataactgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 acaactctgagctgccatatgggtacttcctctggaagagcagccagtgctcataactgc 52
Query: 421 cgagccatctctccagccccgggaaatgagaagttgtgatccaggccctat 471
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51 cgagccatctctccagccccgggaaatgagaagttgtgacccaggccctat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
