BAC Information

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BAC

Clone NameMSMg01-138K03
Chromosome1 (Build37)
Map Location 106,651,834 - 106,652,133
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546, LOC100041134
Downstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138K03.T7 (MSMg01no138_k03.b1)MSMg01-138K03.TJ (MSMg01no138_k03.g1)
ACCAG344249AG344250
length746712
length of high quality
(start - end)
309 (76 - 384)618 (73 - 690)
definitionCHROMAT_FILE: MSMg01no138_k03.b1 PHD_FILE: MSMg01no138_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:43 2005CHROMAT_FILE: MSMg01no138_k03.g1 PHD_FILE: MSMg01no138_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTTGTTTGTTCAAGAGAAAAAATAGAATCATCTCTATGGCTGTTTG
GAAGATTGCATGATATCCTTTTAATTGGATCCTAGAGTACTGTGAGGCCC
TCACAAGCACTGACTACTACCATTATGATTGTGAAGTAGATCTATTAAGA
GAGGAAGAAAGATGCACAGCATCCTAGATTTTCACAGCAGCTGATAAATC
CCTGCCCTCATCAATTACCATCATTATTTTCAATTCTATCTCTTGTCCCT
TGATGAGAGAGACAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGA
AAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGCTTTTCCTTNTTC
CTTTTTGTGTTGTTCCCCCCCCCTTCTTTTTAATTACTCATATGTCCTAC
TATTTCTTTTTTTCTTTATCTTTTGTTTTTGTTCCTTGGTGTACGCGGTT
TACCTCTTGTCCTATTCATTTTCTTTACTCTACCTTTTCTCCCTTTTATC
TTGTTCCTTTTTTCATTTGTTGTTCTCTTAACTCCGATGATTGTCTTTCA
ACCATTGTACCTTTTGCTCTCCCTTATGCCTTTTTTATCTTTTCATTCTG
TGTCTTCCCTTATCTTACGTCTTTTGCATTTTTAAACTTATTTTCCTCGT
CCCCGGCGTTCTAATTTCTTCTTTCGCTTTCCCGCCAGTTGCCCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAATACTGAATGGCTGAGA
AGCACCTGAAAAAAATGTTCAACATCCTTACTTATCAGGGGAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGAGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCG
CAATAGCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGGAAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAGTGGAGTACTACTTAGCAATTAAAAATTATGAATTT
ATGAAAGTCCTAGGCAAATGGATGGATCTGGAGGGCATCATCCTGAGTGA
GGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCT
AAACGTATGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_k03.b1 MSMg01no138_k03.b1 CHROMAT_FILE:
MSMg01no138_k03.b1 PHD_FILE: MSMg01no138_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:43 2005
         (309 letters)



>mm_chr1_106651634_106652342
          Length = 709

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaatcatctctatggctgtttggaagattgcatgatatccttttaattggatcctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaatcatctctatggctgtttggaagattgcatgatatccttttaattggatcctag 260

                                                                       
Query: 61  agtactgtgaggccctcacaagcactgactactaccattatgattgtgaagtagatctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtactgtgaggccctcacaagcactgactactaccattatgattgtgaagtagatctat 320

                                                                       
Query: 121 taagagaggaagaaagatgcacagcatcctagattttcacagcagctgataaatccctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagaggaagaaagatgcacagcatcctagattttcacagcagctgataaatccctgc 380

                                                                       
Query: 181 cctcatcaattaccatcattattttcaattctatctcttgtcccttgatgagagagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcatcaattaccatcattattttcaattctatctcttgtcccttgatgagagagacag 440

                                                                       
Query: 241 agagagagagagagagagaaagagagagagagagaaagagagagagagagagagagagag 300
           ||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct: 441 agagagacagagagagagagagagagagagagagagagagagagagagagggagagagag 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)