TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCCAGCTCTTCGGCTTCTAGGATTTTCTAGGGCATTGGAACACTGGTGGG
GAGGCTCACCTATGTTAAAATTCAGTCTTTAAAGGCACTTATAACAAAAC
AATACTGAAAGAGAGCATACACCATACTAACGAGGAGATAGGGTTTGAGT
ATATGGGTTATGAGAATGCCAAGGTTCCAGGAGGCTGAGTTTCCTTGAAA
CTCTGCCTCGTGACTGCCTCCAGGCCTTTTGATCTCGATGGGCAGACTTT
ACTGGAGTGGGCATAGCATATGTATATGTTCATGCATATATTTATGTATA
AATATATTTATACAAATATATAGATATACATGTATAAATATAAACCTACA
TACATATATACATACATACAAACATACATACATACATACATACATACATA
CTCATTTTCTCCTAACTCAGGTGCTAGGAGAGTTAGGGGACAGTCCCAAG
TTGGAAAAAAACTGATAGTCAAGGTGGAGAAGGCTGGATGCTTCAAGTTG
CCTAAGATTGACAGGTTATTTAGCTATCTATGTATTTCAGGGACTTTTGG
TATGCTGTCAGTGTCTGTTATCAGGAAGAAAATATCCTCAGATCCCTCAG
TTTTGTAGAGCTGATTGCTTACCTAGTATTCTTCTACAAATAAAGCTCTT
GAAAA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCCATAAAAA
CCCCTAGCTTTCGAGCCTCGTGGCCAACATCCATTATCTCCTGTGTGGGA
TGCATGTCGGTCTGGAGCTCCATCATTAAACGACCTCGTGTAATTACATC
AAGATGGTCCTTCGTGATTTTTTGGGTGCACGCCGAATCGGGAGTTGAGT
GGGGGTTTCCCCACTAGGTCTAACACAAACAGATATGACTCTTCAGTTCT
AGTGACTTTCCCTCTCACATAACTTGGGGAAGAACATGTCACTATTGATA
ACATTATCTTTAAAGTATCTGCTGCTAGTTATCTGGCCAGACTGACTATG
CAATGAAATAGACAGGGACATTCCACAGAGGAAAATAAAAATATTATTGG
AAACAACTTCCCATTTCTACCTAAAAGCAAAGGACGCTATCATTTATTTA
AAAATATATGTGCATCATAATGACTTCAATTTGTAATTATAATTTGGAGA
TAGCATCATTTTTAAGAGATCTTTTTATTCTATATGTATGAATGCTTCCC
CACATGTATGTGTATAGTGTGCAGGTCTGGTGTTCTCAGAGACCACAATA
AGGTGTCAGATCCCCCTGGATTGAAGGCACAGATGTTGTTGATCGTTCTT
GTG

Query= MSMg01no138_k12.g1 MSMg01no138_k12.g1 CHROMAT_FILE:
MSMg01no138_k12.g1 PHD_FILE: MSMg01no138_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:45 2005
         (556 letters)



>mm_chr1_128935012_128935967
          Length = 956

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%), Gaps = 1/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacccctaagccccttacccca-taaaaacccctagctttcgagcctcgtggccaaca 59
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 200 cacacccctaagccccttaccccattaaaaacccctagctttcgagccttgtggccaaca 259

                                                                       
Query: 60  tccattatctcctgtgtgggatgcatgtcggtctggagctccatcattaaacgacctcgt 119
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 tccgttatctcctgtgtgggatgcatgtcggtctggagctccatcattaaacgacctcat 319

                                                                       
Query: 120 gtaattacatcaagatggtccttcgtgattttttgggtgcacgccgaatcgggagttgag 179
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 gtaattacatcaagatggtccttcgtgattttttgggtgcacaccgaatcgggagttgag 379

                                                                       
Query: 180 tgggggtttccccactaggtctaacacaaacagatatgactcttcagttctagtgacttt 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggggtttccccactaggtctgacacaaacagatatgactcttcagttctagtgacttt 439

                                                                       
Query: 240 ccctctcacataacttggggaagaacatgtcactattgataacattatctttaaagtatc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccctctcacataacttggggaagaacatgtcactattgataacattatctttaaagtatc 499

                                                                       
Query: 300 tgctgctagttatctggccagactgactatgcaatgaaatagacagggacattccacaga 359
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctgctggttatctggccagactgactatgcaatgaaatagacagggacattccacaga 559

                                                                       
Query: 360 ggaaaataaaaatattattggaaacaacttcccatttctacctaaaagcaaaggacgcta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaaaataaaaatattattggaaacaacttcccatttctacctaaaagcaaaggacgcta 619

                                                                       
Query: 420 tcatttatttaaaaatatatgtgcatcataatgacttcaatttgtaattataatttggag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcatttatttaaaaatatatgtgcatcataatgacttcaatttgtaattataatttggag 679

                                                                       
Query: 480 atagcatcatttttaagagatctttttattctatatgtatgaatgcttccccacatgtat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atagcatcatttttaagagatctttttattctatatgtatgaatgcttccccacatgtat 739

                            
Query: 540 gtgtatagtgtgcaggt 556
           |||||||||||||||||
Sbjct: 740 gtgtatagtgtgcaggt 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)