BAC Information

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BAC

Clone NameMSMg01-138L20
Chromosome1 (Build37)
Map Location 116,353,196 - 116,353,322
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138L20.T7 (MSMg01no138_l20.b1)MSMg01-138L20.TJ (MSMg01no138_l20.g1)
ACCAG344331AG344332
length612831
length of high quality
(start - end)
134 (129 - 262)74 (84 - 157)
definitionCHROMAT_FILE: MSMg01no138_l20.b1 PHD_FILE: MSMg01no138_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:52 2005CHROMAT_FILE: MSMg01no138_l20.g1 PHD_FILE: MSMg01no138_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTGTTTCNNNNTTCTATATTGGGCGCTATACGATCCTATATTCAAG
AACCGCGGAATTCCAACTATGTATCCAGAAAGGGATTTCAGGACTTCCTA
ATAGNGATGAATTAGAAAGCTGGATNNTAGACATTTTTTTAAGAATCTGA
GAAAGCCTCTCATAAGGATAGTCAGCATGCCTAAGAGTGTTGTGTGGATT
TCTGAATATTTAGGCACCCTATTCCTGTCCTAGTGATGACTAATGGAGAA
CTTCACTATGTTTCCTAGTAACACTTACCTCCCCCTCACTTTCTCACATA
CTCCGTAACTGAAAATAACAGGTGGGCTGGAAGAAAATGCCTTTGTTATT
TTAATTCGGGAAACCCGGAAAAAACTTTAAACCCCCCTCCAGGGGGCTTT
TAAAGGGGTTTGGGGGCAAAAAGGGGGGGGAAAAAAAAAAAACCCCCTTT
TTTTTTTTTGTGGTCCACGTGGGAAAAACTCCCTGGGGGTGGGAAAAAAA
TCCCTTTATAGGAAAAAACAGGGCTGCGGGGGGGTTTTTTAACCCCTCCA
TAAAAAACAAAAAAAAAAAATTCCCCCACAAAAAAAATTAATATTTTTTT
TTTTTTTTCCCC
TCCCTNTNTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATATTTCC
CACAGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTTTTGT
TTGTTTGCCCTCTTCCCCNCCCNCCCTCCCCCTCTCTTCCCTCCTCCCCC
TCCCCCCCCTCTCCCCTCCCCCCCCCTCCACCCCCCTTCTCCCCTTCCCC
ACCAAACACACTCCTCAAACCCCCTCCACTACACACAACCCCCACCCTAC
ACCACCCTCACAACAAAACCACTACACCTCCAACCCCAAACCCAAACATC
TCTCTTTTACCACAACACCCCAAAATCCAAACACCCCCAACAACCATAAC
CACCACCCCACACCCACACCACACCAAAAAACAATACACCACCCCCCCCC
CTTAACCAAAATCCCCCCCCCCCCATAAACACCACAAAACCATCACAATA
CAAACCACACACAACCAAACATCACAAAACCACTAAACCCCACACAACAA
TCCACTATACCCATTACCCACACCCCACCTAATACCCCACACAATACCCC
CAAACCCACAACCTACATAACCCACTCTACAAACACACCACAAAACACCC
ACCAACCCAATACACACCCACATACCCCCATCCCACTAAAAATCCCACAC
CACCACCCTACCACACCCACCACCATCAATAATCCAAATACTCACCCTCA
TCTTACCATAAAACCCTCACACCCCCCACCATACCACTCACCTATTAAAC
ACTCACACCATCATATACCCCACAAATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_l20.b1 MSMg01no138_l20.b1 CHROMAT_FILE:
MSMg01no138_l20.b1 PHD_FILE: MSMg01no138_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:52 2005
         (134 letters)



>mm_chr1_116352991_116353522
          Length = 532

 Score =  234 bits (121), Expect = 2e-66
 Identities = 127/129 (98%), Gaps = 2/129 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   tttttttaagaatctgagaaagcctctcataaggatagtcagcatgcctaagagtgttgt 65
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttttttaag-atctgagaaagcctctcataaggatagtcagcatgcctaagagtgttgt 274

                                                                       
Query: 66  gtggatttctgaatatttaggcaccctattcctgtcctagtgatgactaatggagaactt 125
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 273 gtggatttctgaatatttaggcaccctattcctgtcctagtgatgact-atggagaactt 215

                    
Query: 126 cactatgtt 134
           |||||||||
Sbjct: 214 cactatgtt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 532
Length adjustment: 8
Effective length of query: 126
Effective length of database: 524
Effective search space:    66024
Effective search space used:    66024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)