BAC Information

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BAC

Clone NameMSMg01-139B12
Chromosome1 (Build37)
Map Location 155,211,478 - 155,323,893
singlet/doubletdoublet
Overlap geneEG626058, 1700012A16Rik, Dhx9
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795
Downstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139B12.T7 (MSMg01no139_b12.b1)MSMg01-139B12.TJ (MSMg01no139_b12.g1)
ACCAG344585AG344586
length714712
length of high quality
(start - end)		493 (44 - 536)476 (72 - 547)
definitionCHROMAT_FILE: MSMg01no139_b12.b1 PHD_FILE: MSMg01no139_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:22 2005CHROMAT_FILE: MSMg01no139_b12.g1 PHD_FILE: MSMg01no139_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,323,406 - 155,323,893)(155,211,478 - 155,211,953)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNGTTCGAGAATCCGCGGA
ATTCAGGACAAAACAACGTAAGAGGCAGACAGTTGGAGCTGGGACACATT
GCTCCTGTATGTCCTTTATTGAAAGGCATAACAGACAGCAACACCTGAGG
TCTGTGTTCATATACACATGTGCTGATGCTTAGGCTGAACTAAGCAATCA
CATGGGAAACTATTGTAAACTGATTTCTGGTGTTGCTGTTCCCCCCTAGG
TGGAGGAGAATGAGATTGAGTGCTGACTTTAAGCCTGGCTGAGAAACATA
CTGTCATCGGTGTCATTAATGAAAGGGTGGATGTTGTTCCCCTGAAAGCC
AGTGGCCTTTGACCCCCTTGAAGCCCTTGTGCCTGAAGGTCAGTTGACAA
AGAAGTTGAGGAAGGAAACCAACTTTTTTCCCCTTAAGTTTCTCCTAACC
TTTTATTCACAGCACAAAGTCAAGTTTGAATGTGCCTGAGCAGTAAAGGA
CCGGCATATAAACCTAAAACCTATATTTACTCCTAGAGCCTGCTAGCAGT
TTTAGCTATCTGTAATGTGAAAAATGACTTTTGTTCTTTAGGTCCTGGTT
TAAGTATCTATAAAAAATAGGCTAAATTTTTTTTGTAACCTAGGACTTCT
TCCAGCTTGAGATAAATTGGAATTCTGTTACAGGCGCTACTGTTATATCC
CGGTTGCATGTATA

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCAACCCTTATTTTATCTCTGTCCTC
ACTGGATGGTTTCCACTCTCTAATCTGTCTTTAAGCTCAGATCTTCTGGC
CTCTCCTGATCCATTCTAATGCTGAGGTTTTTTTTCTCTGTTTTTTATTT
GACTTATCATGTTTTCTTCCCAACATTTCAGGTTGGCTTTCCTTCAGTGT
TTCCTCTTTATTAAATTCTCTTTCATAGTATCCATCACCTGCATTATTTT
ATTCACAACTTTGTGTCTTTGAGCCTGTGAATAATCATTATTTTGGGTTT
TCTGTCTGGGGTTTTTATCTGACTCACTCTCACTAGATACCATGGCTGTA
GGGTTAATAACTTTCACAGGAGTTATGTCATAGAACTTGAATGGAGTAAT
ATTGACCATACAGTTCAGAAAATAATTTCTCAAAGCAGGAGTTCATGGTG
CCAGGTGTAAGCTCCATGCTATACTCTGAGTAAGATATTAACTGGGAGAG
CAGCAACAGGGATTTAATATTACCAATGTACAATTGCCATACTAGCTGAT
TTATATCAATGGTCCCTGCGACTTCCGTAACTATTGGATAATAACAAACA
ACCAAGGAGGGTATGAAGTATACCAAGACTTTAGTTAATAACATTAGGAG
TGTGAAGGATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_b12.b1 MSMg01no139_b12.b1 CHROMAT_FILE:
MSMg01no139_b12.b1 PHD_FILE: MSMg01no139_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:22 2005
         (493 letters)



>mm_chr1_155323201_155324093
          Length = 893

 Score =  913 bits (472), Expect = 0.0
 Identities = 484/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaggacaaaacaacgtaagaggcagacagttggagctgggacacattgctcctgt 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattcaggacaaaacaatgtaagaggcagacagttggagctgggacacattgctcctgt 634

                                                                       
Query: 66  atgtcctttattgaaaggcataacagacagcaacacctgaggtctgtgttcatatacaca 125
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 633 atgtcctttattgaaaggcataacagacagcaacaccagaggtctgtgttcatatacaca 574

                                                                       
Query: 126 tgtgctgatgcttaggctgaactaagcaatcacatgggaaactattgtaaactgatttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgtgctgatgcttaggctgaactaagcaatcacatgggaaactattgtaaactgatttct 514

                                                                       
Query: 186 ggtgttgctgttcccccctaggtggaggagaatgagattgagtgctgactttaagcctgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggtgttgctgttcccccctaggtggaggagaatgagattgagtgctgactttaagcctgg 454

                                                                       
Query: 246 ctgagaaacatactgtcatcggtgtcattaatgaaagggtggatgttgttcccctgaaag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctgagaaacatactgtcatcggtgtcattaatgaaagggtggatgttgttcccctgaaag 394

                                                                       
Query: 306 ccagtggcctttgacccccttgaagcccttgtgcctgaaggtcagttgacaaagaagttg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccagtggcctttgacccccttgaagcccttgtgcctgaaggtcagttgacaaagaagttg 334

                                                                       
Query: 366 aggaaggaaaccaacttttttccccttaagtttctcctaaccttttattcacagcacaaa 425
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggaaggaaactaacttttttccccttaagtttctcctaaccttttattcacagcacaaa 274

                                                                       
Query: 426 gtcaagtttgaatgtgcctgagcagtaaaggaccggcatataaacctaaaacctatattt 485
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 273 gtcaagtttgaatgtgcctgagcagtaaaggaccggcataaaaacctaaaacctatattt 214

                   
Query: 486 actcctag 493
           ||||||||
Sbjct: 213 actcctag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no139_b12.g1 MSMg01no139_b12.g1 CHROMAT_FILE:
MSMg01no139_b12.g1 PHD_FILE: MSMg01no139_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:22 2005
         (476 letters)



>mm_chr1_155211278_155212153
          Length = 876

 Score =  913 bits (472), Expect = 0.0
 Identities = 475/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccaacccttattttatctctgtcctcactggatggtttccactctctaatctgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaccaacccttattttatctctgtcctcactggatggtttccactctctaatctgtctt 260

                                                                       
Query: 61  taagctcagatcttctggcctctcctgatccattctaatgctgaggttttttttctctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagctcagatcttctggcctctcctgatccattctaatgctgaggttttttttctctgt 320

                                                                       
Query: 121 tttttatttgacttatcatgttttcttcccaacatttcaggttggctttccttcagtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttatttgacttatcatgttttcttcccaacatttcaggttggctttccttcagtgtt 380

                                                                       
Query: 181 tcctctttattaaattctctttcatagtatccatcacctgcattattttattcacaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctctttattaaattctctttcatagtatccatcacctgcattattttattcacaactt 440

                                                                       
Query: 241 tgtgtctttgagcctgtgaataatcattattttgggttttctgtctggggtttttatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtctttgagcctgtgaataatcattattttgggttttctgtctggggtttttatctg 500

                                                                       
Query: 301 actcactctcactagataccatggctgtagggttaataactttcacaggagttatgtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 actcactctcactagataccatggctgtagggttaataactttcagaggagttatgtcat 560

                                                                       
Query: 361 agaacttgaatggagtaatattgaccatacagttcagaaaataatttctcaaagcaggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacttgaatggagtaatattgaccatacagttcagaaaataatttctcaaagcaggag 620

                                                                   
Query: 421 ttcatggtgccaggtgtaagctccatgctatactctgagtaagatattaactggga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcatggtgccaggtgtaagctccatgctatactctgagtaagatattaactggga 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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