BAC Information

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BAC

Clone NameMSMg01-139D03
Chromosome1 (Build37)
Map Location 63,920,624 - 64,064,185
singlet/doubletdoublet
Overlap geneLOC671842, OTTMUSG00000013918
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik
Downstream geneKlf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139D03.T7 (MSMg01no139_d03.b1)MSMg01-139D03.TJ (MSMg01no139_d03.g1)
ACCAG344663AG344664
length708706
length of high quality
(start - end)
318 (46 - 363)382 (74 - 455)
definitionCHROMAT_FILE: MSMg01no139_d03.b1 PHD_FILE: MSMg01no139_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:30 2005CHROMAT_FILE: MSMg01no139_d03.g1 PHD_FILE: MSMg01no139_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,920,624 - 63,920,937)(64,063,804 - 64,064,185)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAAATCCGCGG
AATTCTCCATCATCAACTCCGCCTTTAATGATGGGGAAACTCATTAGAAA
ATGCTGCCAGAGGTCTCCAGGGAAACACATCAGAAGTGAAGAACGAGTCA
GGCATGATGTGCGGCCTCAACATGGAAGGAACATTTTGTTTCCAACTAAT
AGTATGATGTTAGCATGGAGTTTATTTGATACCAGTCATTGCTTGCCTAA
CTAAGTTGTACCTCTGAGAGGAAACATGTGGGACTGAGCAAAGCTTACCA
ACCATGTTAGAAGTCTTTAAGATTTAGCTTAGAGAATCCCTCCTTGTACA
GTTAAAAACAAAGTTTGTTTTCATTTCTTTCATCAATTATGTGGATCCTT
GACCATGAAGAGGGGCGATATTCATACAGGTTCTTCTGGCATTGTTTACC
CCAGCATCGTGATACAGAGATGGAGTTCCATATATTAGTAGCCTTTACAA
CAACTGCAGCTTGAACAAGGACTATTGCGAAGCTAGTCCTTACCCTGTCT
TACAGCTTGATTGATCCTACACAGCACAGAGCACGGCTGATCACCCAATG
ACCGCCCTATTTCTGTTGATCTCCACTTACCGCTCCTGATGCATTCTATG
AGATTTGGCCCCTGCATACCCGCCCTCACTCGACACCCAGTGTACCTTTG
TAAATTTA
CAATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGATGCTCAAGGCAATTTATATTAG
TTAGAACTGTGTGTTTATGCTTATTCATTTGCTTTGGTGGTGACAGAAAC
TCAACATGAAAAGGCCTCGCACAAAGGGGAGTTCATTGGAAGTATCTCGG
CATATACACAATTCAGTACAGGACTATAGGATGGAATGTACTTCTAGAAA
CATTCAGACTGGGAACTCACTTGCTCAGGCCTTCCCCTCCATGCATTTAT
TTCACTGTTCTCTTCCTAGAGACTTCTACTTCTTTGCCTTCATCTCAGAA
AATGTGGCCGCCATAGCTATAAAGCGCCTTTGTCAAAGCCAGAGATACTG
ACTTCTTGGTTACAATACCATAATTCCCAAGGAAAGCATTGGTGGGCTCT
GTTTGGGCCAAGAGCTCACCCTATACCCACTCTTGACTGTGGGCAGCCTT
CTCCTCCTCAGTCAGGGGCACAGTCTCAGTCAACCAGTAAGGGCCAATTG
TGTTTTTGCAAATACACCGGACCTTTATAATGGAGCCTGCGATATCCATA
TGAGATCCCAATGATTGTTCCTGGAAAGTAGCTCTGAATGCAATTGCACC
GTATCCACTCCTGGAAATGTTCCTCATGGTCCCACCATCTGGTCTCTTGT
ATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_d03.b1 MSMg01no139_d03.b1 CHROMAT_FILE:
MSMg01no139_d03.b1 PHD_FILE: MSMg01no139_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:30 2005
         (318 letters)



>mm_chr1_63920420_63921137
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatcatcaactccgcctttaatgatggggaaactcattagaaaatgctgcca 64
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatcatcaacactgcctttaatgatggggaaactcattagaaaatgctgcca 264

                                                                       
Query: 65  gaggtctccagggaaacacatcagaagtgaagaacgagtcaggcatgatgtgcggcctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggtctccagggaaacacatcagaagtgaagaacgagtcaggcatgatgtgcggcctca 324

                                                                       
Query: 125 acatggaaggaacattttgtttccaactaatagtatgatgttagcatggagtttatttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatggaaggaacattttgtttccaactaatagtatgatgttagcatggagtttatttga 384

                                                                       
Query: 185 taccagtcattgcttgcctaactaagttgtacctctgagaggaaacatgtgggactgagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccagtcattgcttgcctaactaagttgtacctctgagaggaaacatgtgggactgagc 444

                                                                       
Query: 245 aaagcttaccaaccatgttagaagtctttaagatttagcttagagaatccctccttgtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 aaagcttaccaaccatgttagaagtctttaagatttagcttagagaatccctccttgtaa 504

                         
Query: 305 agttaaaaacaaag 318
           ||||||||||||||
Sbjct: 505 agttaaaaacaaag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no139_d03.g1 MSMg01no139_d03.g1 CHROMAT_FILE:
MSMg01no139_d03.g1 PHD_FILE: MSMg01no139_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:31 2005
         (382 letters)



>mm_chr1_64063604_64064385
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggatgctcaaggcaatttatattagttagaactgtgtgtttatgcttattcatttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaggatgctcaaggcaatttatattagttagaactgtgtgtttatgcttattcatttgct 523

                                                                       
Query: 61  ttggtggtgacagaaactcaacatgaaaaggcctcgcacaaaggggagttcattggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttggtggtgacagaaactcaacatgaaaaggcctcgcacaaaggggagttcattggaagt 463

                                                                       
Query: 121 atctcggcatatacacaattcagtacaggactataggatggaatgtacttctagaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atctcggcatatacacaattcagtacaggactataggatggaatgtacttctagaaacat 403

                                                                       
Query: 181 tcagactgggaactcacttgctcaggccttcccctccatgcatttatttcactgttctct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcagactgggaattcacttgctcaggccttcccctccatgcatttatttcactgttctct 343

                                                                       
Query: 241 tcctagagacttctacttctttgccttcatctcagaaaatgtggccgccatagctataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcctagagacttctacttctttgccttcatctcagaaaatgtggccgccatagctataaa 283

                                                                       
Query: 301 gcgcctttgtcaaagccagagatactgacttcttggttacaataccataattcccaagga 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtgcctttgtcaaagccagagatactgacttcttggttacaataccataattcccaagga 223

                                 
Query: 361 aagcattggtgggctctgtttg 382
           ||||||||||||||||||||||
Sbjct: 222 aagcattggtgggctctgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)