BAC Information

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BAC

Clone NameMSMg01-139D08
Chromosome1 (Build37)
Map Location 17,134,004 - 17,134,329
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
Downstream geneGdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139D08.T7 (MSMg01no139_d08.b1)MSMg01-139D08.TJ (MSMg01no139_d08.g1)
ACCAG344673AG344674
length718715
length of high quality
(start - end)
547 (39 - 585)581 (70 - 650)
definitionCHROMAT_FILE: MSMg01no139_d08.b1 PHD_FILE: MSMg01no139_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:31 2005CHROMAT_FILE: MSMg01no139_d08.g1 PHD_FILE: MSMg01no139_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTC
AGGTGTGATCGACCTTTTTTATCTGGGGTCCATCTGAGGGAGGTCCATGC
AGGAGAGCACATGGACCACAGAAGCAACAGACCTTCTTGGACAAGGTACC
TTCGGGCCTTCATCCAGCAAGTCTTGGATAGCCCTACACACCAAAAACAG
CAAGATTCGGATGTAAAATCATATCTCATGATTCTGGTAGAGGATTTTAA
GAAGGACATTAATAACTCACTTAAAGAAATACCATGGGCATACCATTGCA
TACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTG
AGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCT
ATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAA
GGAGCTAAAGGAATCTGCAACCCTATAGGTGGAACAACATTATGAACTAA
CCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGC
CTAGTCGGCCATCACTGTAAAGAGAGGCCCATTGGACACGCTAACTTTAT
ATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGCTGGGT
CGCCAGCCCACTAATATTCTTATCCACTTTATCTCTCCCCTCTATTTACC
GCCTCTTTCTATTATATC
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACTTGAAAAAATGTTCAACATCCTTAATCATTAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAACTGGACTTAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCTAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATA
TTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACA
CATGAAACTCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_d08.b1 MSMg01no139_d08.b1 CHROMAT_FILE:
MSMg01no139_d08.b1 PHD_FILE: MSMg01no139_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:31 2005
         (547 letters)



>mm_chr1_17134004_17134950
          Length = 947

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%), Gaps = 2/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcaggtgtgatcgaccttttttatctggggtccatctgagggaggtccatgcagg 65
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaattcaggtgtgatcgacattttttatctggggtccatctgagggaggtccatgcagg 267

                                                                       
Query: 66  agagcaca-tggaccacagaagcaacagaccttcttggacaaggtaccttcgggccttca 124
           ||||||||  || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 agagcacacagg-ccacagaagcaacagaccttcttggacaaggtaccttcgtgccttca 208

                                                                       
Query: 125 tccagcaagtcttggatagccctacacaccaaaaacagcaagattcggatgtaaaatcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tccagcaagtcttggatagccctacacaccaaaaacagcaagattcggatgtaaaatcat 148

                                                                       
Query: 185 atctcatgattctggtagaggattttaagaaggacattaataactcacttaaagaaatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atctcatgattctggtagaggattttaagaaggacattaataactcacttaaagaaatac 88

                                                                       
Query: 245 catgggcataccattgcatacactagcaagattttatcgaaaggacccagatgtagctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  catgggcataccattgcatacactagcaagattttatcgaaaggacccagatgtagctgt 28

                                      
Query: 305 ctcttgtgagactatgccggggcctag 331
           |||||||||||||||||||||||||||
Sbjct: 27  ctcttgtgagactatgccggggcctag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)