BAC Information

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BAC

Clone NameMSMg01-139E13
Chromosome1 (Build37)
Map Location 99,525,536 - 99,526,103
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139E13.T7 (MSMg01no139_e13.b1)MSMg01-139E13.TJ (MSMg01no139_e13.g1)
ACCAG344728AG344729
length713711
length of high quality
(start - end)
568 (49 - 616)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no139_e13.b1 PHD_FILE: MSMg01no139_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:38 2005CHROMAT_FILE: MSMg01no139_e13.g1 PHD_FILE: MSMg01no139_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCAGGTACCGTGAGTATGAGTTTGTGGCTCCCCCCCTTTTT
ATCTCCTGAAAGACTAAAAGGGAATTTGAGGATACCTTATGGTAGTAAAC
ACTGACATCTGGCCTCTGACCTCCCCTTCAGTGGGAATTCTGATAGGTGC
TCTGAGAAGACACCTAATTATAGTTGGAGTTGCTACCAGTATTTAAAACT
GCAAAGGGTAAGGGCGTCGTGAATGTGTGCTCTGAGCTTTATCTTCTCAT
GTGAAATGATAATAAATTATGCGCAAAGGCAGAACAGTGAGGAAAACGCA
GTCTTATTACATTGAATTTAGAGGATGGCTAATTCTGATGGGGTTGAAGT
GTTGCTCATCCTGAAGCACGCATATTAGTGCTGGGAAAAGTCCTTGAGGC
ATGTGGCATGGAACTGTGACATTTACCTAGTAAGCTGCACTGAAGCATCT
TGTACAGAGCTGGGGAGTGAGGGCGGAATGCCCGAGTGGTCTCACTGCTG
ATGCGTTGGCACTCATTACAGTTAAGAACCTGAGAGCTGTCCTCAGTGGT
TACTCTGGTGCTATAAAAGGCATGTGGAGATAGATTTCCTAAATAGTAAA
TCTCAAGTGGGTTGGGAAGGCTTCTAGGTCAATATACGTTTATTGAGGCT
GTGTTCTCTAATG
NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTGAGGAATACTGAATGGCT
GAAAAGCACCTAAAGAAATTTTCAACATCCTTAGTCATCACGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAAA
TCAAAACATCAGGTGACAAAAGATGCTGGTAAGAATGTGGAGAAAAAGAA
ACACTCCTCCACTTCTGGTGGGATTGCAAACTACTCTGAAAATCAGTTTG
GCAGTTCCTCAGAAAATTAGACATAGCTGAGGGCCCAGATATACCACTCC
TGGACACATACCCAGAAGATGCTCCAACATGTAATAGGAACACATGCTCC
ACTATGTTCAAAGCAGCTTTAGGTATAAATAAAATAGCCAGAAGCTGGAA
AGAACCCAGATGTCCTTCAACAGATAATTGAATACAGAAATTGTGATACA
TTTACACAATGGAGTACTATTCAGCTATTAAAAATGGTGAATCATGAAGT
TCTTAGGCAAATGGATAGAATTAAAATATCACCCTGAGTGGGGTAACCCA
ATCACAAAAGAACACACATGGTATACACTTACTGATAAGTGGATATTAGC
CCAGAAGTTCGGTTTACCCAAGATACAAGTCTCAGACCACATGAAGCTCT
AGAAGGAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_e13.b1 MSMg01no139_e13.b1 CHROMAT_FILE:
MSMg01no139_e13.b1 PHD_FILE: MSMg01no139_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:38 2005
         (568 letters)



>mm_chr1_99525332_99526303
          Length = 972

 Score = 1040 bits (538), Expect = 0.0
 Identities = 559/568 (98%), Gaps = 4/568 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcaggtaccgtgagtatgagtttgtggct----ccccccctttttatctcctg 60
           |||||||||||| || ||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 772 gaattctgcagggactgtgagtatgagtttgtggctccccccccccctttttatctcctg 713

                                                                       
Query: 61  aaagactaaaagggaatttgaggataccttatggtagtaaacactgacatctggcctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaagactaaaagggaatttgaggataccttatggtagtaaacactgacatctggcctctg 653

                                                                       
Query: 121 acctccccttcagtgggaattctgataggtgctctgagaagacacctaattatagttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acctccccttcagtgggaattctgataggtgctctgagaagacacctaattatagttgga 593

                                                                       
Query: 181 gttgctaccagtatttaaaactgcaaagggtaagggcgtcgtgaatgtgtgctctgagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gttgctaccagtatttaaaactgcaaagggtaagggcgtcgtgaatgtgtgctctgagct 533

                                                                       
Query: 241 ttatcttctcatgtgaaatgataataaattatgcgcaaaggcagaacagtgaggaaaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttatcttctcatgtgaaatgataataaattatgcgcaaaggcagaacagtgaggaaaacg 473

                                                                       
Query: 301 cagtcttattacattgaatttagaggatggctaattctgatggggttgaagtgttgctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cagtcttattacattgaatttagaggatggctaattctgatggggttgaagtgttgctca 413

                                                                       
Query: 361 tcctgaagcacgcatattagtgctgggaaaagtccttgaggcatgtggcatggaactgtg 420
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcctgaagtaggcatattagtgctgggaaaagtccttgaggcatgtggcatggaactgtg 353

                                                                       
Query: 421 acatttacctagtaagctgcactgaagcatcttgtacagagctggggagtgagggcggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acatttacctagtaagctgcactgaagcatcttgtacagagctggggagtgagggcggaa 293

                                                                       
Query: 481 tgcccgagtggtctcactgctgatgcgttggcactcattacagttaagaacctgagagct 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 292 tgcccgagtggtctcactgctgatgcgttggcactcattacagttacgaacctgagagct 233

                                       
Query: 541 gtcctcagtggttactctggtgctataa 568
           ||||||||||||||||||||||||||||
Sbjct: 232 gtcctcagtggttactctggtgctataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 972
Length adjustment: 10
Effective length of query: 558
Effective length of database: 962
Effective search space:   536796
Effective search space used:   536796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)