BAC Information

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BAC

Clone NameMSMg01-139F03
Chromosome1 (Build37)
Map Location 62,892,925 - 62,893,511
singlet/doubletsinglet
Overlap genenone
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139F03.T7 (MSMg01no139_f03.b1)MSMg01-139F03.TJ (MSMg01no139_f03.g1)
ACCAG344756AG344757
length712711
length of high quality
(start - end)
463 (68 - 530)587 (71 - 657)
definitionCHROMAT_FILE: MSMg01no139_f03.b1 PHD_FILE: MSMg01no139_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:41 2005CHROMAT_FILE: MSMg01no139_f03.g1 PHD_FILE: MSMg01no139_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGCGGGTTCATTTCTGGGTCTCCAATTCTATTCCATTGCTCTA
CTTGTCTGTCTCTATACCAGCACCACGCAGTTTTCATCCCAATTGCTCTG
CAATAAAGTTTTACGTCTGGTATGCCGATTCCGCCCGAAGTTTTTTTATA
CTTGAGAAGATT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGACTCAGCATGGTTCCTTAGACCATAGTG
ACTAACCATGAGAATGTACAGATGTGAGGGAGAAAAGCATGCTTTCTGTC
AACTAGGGATCATCACAACAAAGCTGGATGGCAGCCTCAAAACTCAACTA
GATGTAGACAGACAGAAAAACCCTTAAAATGGGTCAAAGTTCCATATATA
TGAGCTACAACTATAAAACTTTAAGGTAAAAAATGGCTATAGGTTATGGT
TTAGATATGAAGTATTCCTTAAAAGATTTATGGGTCAAAGACTTAGTCCC
CAGATGACAGAGGCAATTACTGAAAAGGTGCCAGGCATGGTAGAGTACAC
CTCCAACCCCACAACTCAGGAAGTAAAGGCAGGCATATCTTTGGGAGTTG
AGGCCAGCCAGTCTGCATCATGAGTTCCAGGACAGCCAAGGTTTTATAGG
GAGACCTCATTTCAAGACCATTCCCCAAAATGAAGGAAAAGAAAAGTGAT
TGCATCTTAAAGTTCTGATCTAGCCAGTGGTTTAATCCCTTAGTGGATTC
ATTCATTTTATAATGACATATATTGGGAGGCACAGTCTGATGGAGGAAGG
AGGTCTCTGGCTTAGTGGTATGCCTGGGGAAAGGTAGACCTACTGCCCAA
CTCCTTCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_f03.g1 MSMg01no139_f03.g1 CHROMAT_FILE:
MSMg01no139_f03.g1 PHD_FILE: MSMg01no139_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:41 2005
         (587 letters)



>mm_chr1_62892725_62893711
          Length = 987

 Score = 1029 bits (532), Expect = 0.0
 Identities = 574/588 (97%), Gaps = 2/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactcagcatggttccttagaccatagtgactaaccatgagaatgtacagatgtgaggg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgactcagcatggttccttagaccatagtgactaaccgtgagaatgtacagatgtgaggg 260

                                                                       
Query: 61  agaaaagcatgctttctgtcaactagggatcatcacaacaaagctggatggcagcctcaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaagcatgctttatgtcaactagggatcatcacaacaaagctggatggcagcctcaa 320

                                                                       
Query: 121 aactcaactagatgtagacagacagaaaaacccttaaaatgggtcaaagttccatatata 180
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 321 aactcaactagatgtagacagacagaaaaaccctcaaaatgggtcaaagttccacatata 380

                                                                       
Query: 181 tgagctacaactataaaactttaagg-taaaaaatggctataggttatggtttagatatg 239
           |||||||||||||||||||||||||| |||| | |||||||||||||||| |||||||||
Sbjct: 381 tgagctacaactataaaactttaagggtaaaca-tggctataggttatggattagatatg 439

                                                                       
Query: 240 aagtattccttaaaagatttatgggtcaaagacttagtccccagatgacagaggcaatta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 aagtattccttaaaagatttatgggtcaaagacttagtccccagatgacagagccaatta 499

                                                                       
Query: 300 ctgaaaaggtgccaggcatggtagagtacacctccaaccccacaactcaggaagtaaagg 359
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 ctgaaaaggtgccaggtatggtagagtacaccttcaaccccacaactcaggaagtaaagg 559

                                                                       
Query: 360 caggcatatctttgggagttgaggccagccagtctgcatcatgagttccaggacagccaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caggcatatctttgggagttgaggccagccagtctgcatcatgagttccaggacagccaa 619

                                                                       
Query: 420 ggttttatagggagacctcatttcaagaccattccccaaaatgaaggaaaagaaaagtga 479
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 ggttttatagggagacctcatttcaagaccattccccaaaatgaagggaaagaaaagtga 679

                                                                       
Query: 480 ttgcatcttaaagttctgatctagccagtggtttaatcccttagtggattcattcatttt 539
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgcatcttaaagttctgatctaaccagtggtttaatcccttagtggattcattcatttt 739

                                                           
Query: 540 ataatgacatatattgggaggcacagtctgatggaggaaggaggtctc 587
           |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 740 ataatgacatatattgggaggcacagcctgatggaggaaggaggtctc 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)