BAC Information

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BAC

Clone NameMSMg01-139I06
Chromosome1 (Build37)
Map Location 35,684,417 - 35,684,998
singlet/doubletsinglet
Overlap genenone
Upstream geneAA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139I06.T7 (MSMg01no139_i06.b1)MSMg01-139I06.TJ (MSMg01no139_i06.g1)
ACCAG344895AG344896
length710712
length of high quality
(start - end)
638 (47 - 684)579 (79 - 657)
definitionCHROMAT_FILE: MSMg01no139_i06.b1 PHD_FILE: MSMg01no139_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:56 2005CHROMAT_FILE: MSMg01no139_i06.g1 PHD_FILE: MSMg01no139_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAGCATGCTCTTGAACTATTGGAAGCCTCTTTGTTTTGACAGA
CGTGTGATACTAAAATAAGATGCAGGGTGTGTGGGAAATGGCATAAGTGT
CGTCTGAGAGCTCTGTGTTGTATTTACACTTCTGTCTATGCATTTAAACG
TCTCTTTAAGCAGTAGGCTGATTAGGAGTAAACTCACTGTAGAGTGCTTA
CCTAGCACACTTAAGACCCTACATTTAATCCCCAGCACCTCAAACCAAAA
CCAAAACTAAATACAAGGCTCTGAAGTGTGACAAGCAGAGGTCCCAGGAC
AACCTCCTAGGCCATTATAGGTGCACATGCTCAGATGCAGAAGGAGGTGA
CTGGAGGATCGCCATGATGTCAGATGCAGAAGGAGATGTGATGGCTGTGA
AACCCAGAGACTGGGTGAATCTCCAGATTGTTAAAGGGAGGATGAAGGAA
AATGGTCATTTGGTTCCAGAAAGGAGTTGAATGAAACTATCCTCTAGACA
ATGAGGACAGCTTATTAGAAGGGAGGGGAGATGAACACAATCATGGAGGT
TATGGTTGGACCATAAGTTTAGAAAGCATTATGGTATGGCCATCATGCCA
GAGCATGCAACAGCAGTGTGGTGGGACCTTGGGATGGAAGACATTGTAGA
CAAAGTTAGC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGAGGCAGAAACAAGAGGCC
AGCTGATGGCATTGTATCTTCTGGGGAAGGAACAAAAAATGGACAGGAAG
TGGGCCCATGCTCTAAAGCAAGACCAACCCCCATCTCCCCACCCCCCCCC
CCGAGTGCTTTACCTCCCCCAGCAAGATGCCATCTCTGTGCTGGTTTCTT
GTTGTCAGTAAACAGAGACCTGACAAGACACAACCTCAATAGAGGAGCTA
CCTCCATCAGACTGACCTATGGGCAAATCCGTGGGGGCATTTTCTTGACA
AGGATTGATGGTGGAGGCCCCAGATGGCTGTGAGTCGTGTTACCCCTGGG
CTGGTGGTTCTGGATGCTATAAGTAAGCAGGCCGAGTAGAATATGGGGAA
CAAGGACAGTGTTTCACAAAATGGAGCTGCAGGTAAGCTAGTAGGGTGTT
TTCTTAGTTAGTATTAGATGGAGGAGGGTGCAGCCCTCTGTGGCACCACC
CCTGGGCATGTTGTCCTGAACAGAATTAGGAAGCAGCTTTAACAAGGCAT
GTGAACAATCCAGTAAGCAGCTTCCCTCTATGGTTTCTGCTTCGGCTTCT
GCTTCTAGGGTTTTGCCTTGGGTTCTCGTAATGACTTCCCTCGATGGAGG
ACTATGCCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_i06.b1 MSMg01no139_i06.b1 CHROMAT_FILE:
MSMg01no139_i06.b1 PHD_FILE: MSMg01no139_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:56 2005
         (638 letters)



>mm_chr1_35683961_35684998
          Length = 1038

 Score = 1087 bits (562), Expect = 0.0
 Identities = 577/582 (99%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgtgatactaaaataagatgcagggtgtgtgggaaatggcataagtgtcgtctgagagct 116
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1038 tgtgatactaaaataagatgcaggatgtgtgggaaatggcataagtgtcgtctgagagct 979

                                                                        
Query: 117  ctgtgttgtatttacacttctgtctatgcatttaaacgtctctttaagcagtaggctgat 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  ctgtgttgtatttacacttctgtctatgcatttaaacgtctctttaagcagtaggctgat 919

                                                                        
Query: 177  taggagtaaactcactgtagagtgcttacctagcacacttaagaccctacatttaatccc 236
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  gaggagtaaactcactgtagagtgcttacctagcacacttaagaccctacatttaatccc 859

                                                                        
Query: 237  cagcacctcaaaccaaaaccaaaactaaatacaaggctctgaagtgtgacaagcagaggt 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  cagcacctcaaaccaaaaccaaaactaaatacaaggctctgaagtgtgacaagcagaggt 799

                                                                        
Query: 297  cccaggacaacctcctaggccattataggtgcacatgctcagatgcagaaggaggtgact 356
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 798  cccaggacaacctcctaggccattataggtgcacatgctcagatgcagaaggagatgact 739

                                                                        
Query: 357  ggaggatcgccatgatgtcagatgcagaaggagatgtgatggctgtgaaacccagagact 416
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 738  ggaggatcaccatgatgtcagatgcagaaggagatatgatggctgtgaaacccagagact 679

                                                                        
Query: 417  gggtgaatctccagattgttaaagggaggatgaaggaaaatggtcatttggttccagaaa 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678  gggtgaatctccagattgttaaagggaggatgaaggaaaatggtcatttggttccagaaa 619

                                                                        
Query: 477  ggagttgaatgaaactatcctctagacaatgaggacagcttattagaagggaggggagat 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618  ggagttgaatgaaactatcctctagacaatgaggacagcttattagaagggaggggagat 559

                                                                        
Query: 537  gaacacaatcatggaggttatggttggaccataagtttagaaagcattatggtatggcca 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558  gaacacaatcatggaggttatggttggaccataagtttagaaagcattatggtatggcca 499

                                                      
Query: 597  tcatgccagagcatgcaacagcagtgtggtgggaccttggga 638
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498  tcatgccagagcatgcaacagcagtgtggtgggaccttggga 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)