NNNTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCTGTTCTTTATAGACAAGCTGTTATGGTATTGGGTAGA
AATTGGTTTATTGTCCAGTGTTAATCTGATTTACATAAATAAAAAAGATT
GTTGTGTTTTTGTTGTGTTCTCCTCTTCAGTTCCTTAAACATAAAGATTG
TTCCATTCTACAGACAGAAACAAAGATATAGCCAAAAAGATTTCTTCCTT
TTGCACCCCCGCCACAGACGTACATACAGTGTTTTTGTTACAACAGAAAT
ATAATAAATTTTGCATATCAGAAAAATGAACACTTTTATTTCCAGTAGGA
GGTGCTTTTTAAAAAACTCTTAAAACTTCAAATGGATACTAGTCCCAATC
ATATTTGTAATAAAAGTTCATGTTAACTGCAACTTATTGTTTGTTTTACC
CTTAAAAGTAAAAAGGAGTGTTATATTTACTTCCTGGGTGACTTAGAGAT
CCTGAATCCAAGTCAAAGATGCTACAAGTGGGTGGCCAATGGGCTAGGTG
TTCCCAAGTGGTGTTGGTACATATTGCAAAACTGGGTGTTGGCTCTTGCC
CCTGGAGACATTGGTTCTTGGGGGGTGGTAAGGCTTAAGCGCCCCCCTTT
ACTTTCCTTTTTTTCCCCCTCTTCCCTTTTCCTCTCTTTTCCCTTCATT

TTTACCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGG
CTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAAAAAAAAAAAATCAGGTGATAGCAGATGCTGGTGAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAAAA
CCACTCTGGAAAATAGTCTGGTGGTTCCTCAGAATATTGGACATAGTACT
AATGGAGGATCCTACAATACCTCTCCTGGGAATATATCCAGAAGATGTTC
CAACCGATAAGAAGGACACATGCTCCACTATGTTCATAGCAGCTTAATTA
TAATAACCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATAG
ATACAGAAAATGTGGTACATTTTCACAATGGAGTACTGCTCAGCTATTAA
AAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCA
TTATCCTGAGTGAGATAACCCAATCACAAAAGAACTCACATGGTATGTAC
TCACTGATAAGTGGATATTAGCCCAGGAACTTAGAATACCCAAGATAT

Query= MSMg01no139_i13.b1 MSMg01no139_i13.b1 CHROMAT_FILE:
MSMg01no139_i13.b1 PHD_FILE: MSMg01no139_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:58 2005
         (581 letters)



>mm_chr1_19228347_19229327
          Length = 981

 Score = 1087 bits (562), Expect = 0.0
 Identities = 571/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctgttctttatagacaagctgttatggtattgggtagaaattggtttattgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgttctttatagacaagctgttatggtattgggtagaaattggtttattgt 264

                                                                       
Query: 65  ccagtgttaatctgatttacataaataaaaaagattgttgtgtttttgttgtgttctcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagtgttaatctgatttacataaataaaaaagattgttgtgtttttgttgtgttctcct 324

                                                                       
Query: 125 cttcagttccttaaacataaagattgttccattctacagacagaaacaaagatatagcca 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 cttcagttccttaaacataaagattgttccattctacagacagaaacaaagatatagcaa 384

                                                                       
Query: 185 aaaagatttcttccttttgcacccccgccacagacgtacatacagtgtttttgttacaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaagatttcttccttttgcacccccgccacagacgtacatacagtgtttttgttacaac 444

                                                                       
Query: 245 agaaatataataaattttgcatatcagaaaaatgaacacttttatttccagtaggaggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaatataataaattttgcatatcagaaaaatgaacacttttatttccagtaggaggtg 504

                                                                       
Query: 305 ctttttaaaaaactcttaaaacttcaaatggatactagtcccaatcatatttgtaataaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttttaaaaaactcttaaaacttcaaatggatactagtcccaatcatatttgtaataaa 564

                                                                       
Query: 365 agttcatgttaactgcaacttattgtttgttttacccttaaaagtaaaaaggagtgttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttcatgttaactgcaacttattgtttgttttacccttaaaagtaaaaaggagtgttat 624

                                                                       
Query: 425 atttacttcctgggtgacttagagatcctgaatccaagtcaaagatgctacaagtgggtg 484
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 atttacttcctgggtgactaagagatcctgaatacaagtcaaagatgctacaagtgggtg 684

                                                                       
Query: 485 gccaatgggctaggtgttcccaagtggtgttggtacatattgcaaaactgggtgttggct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccaatgggctaggtgttcccaagtggtgttggtacatattgcaaaactgggtgttggct 744

                                             
Query: 545 cttgcccctggagacattggttcttggggggtgg 578
           ||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgcccctggagacattggttcttggggggtgg 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)