BAC Information

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BAC

Clone NameMSMg01-139J16
Chromosome1 (Build37)
Map Location 77,631,653 - 77,631,975
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J16.T7 (MSMg01no139_j16.b1)MSMg01-139J16.TJ (MSMg01no139_j16.g1)
ACCAG344961AG344962
length735719
length of high quality
(start - end)		327 (42 - 368)649 (71 - 719)
definitionCHROMAT_FILE: MSMg01no139_j16.b1 PHD_FILE: MSMg01no139_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:03 2005CHROMAT_FILE: MSMg01no139_j16.g1 PHD_FILE: MSMg01no139_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGAAT
TCAGTAGCTTCTCCGGACACTGGGAATTTTTCACTTATCTACTTTTCTTC
CTAAAATTAAATTTGTGTTTTCATTTTAGCAACTGTGTGCTTCTGCATAT
GTATGTGTGTATATGTGTACAGATGTGTGTTGGTATGTGTGTGTACATGC
ATGCATATGTGCATGTGTGTGTGGGCATGCATATGCATGTGTACATGTAT
GCATTTACATAGGAGCACACGTGCTGTGGTGCCTTCGTGCAAGCCACAGA
ACAACTTTCTGGAGTTGGTTCTCAATTTGCAACTTGTTTTGAGTCAGGGT
CTCTTGAAGATCTGGGAAGCGAAGGAGGGAGGGCTTATGAGCATGAGGGA
GAGTAAAGACCCCCCCCCCCCTTTTTTTACACACTACCTTTTTCTTTATT
CTTTTCCCCCCCTACTCTTTGTAACCTTTGTCATTATATATGCCCCCCCT
TCCTTTTCCCCCCCACCACCCTATTCCCCCCTATTATACCCTACAATATT
ATTTTTACCTATTTCCCCACTCACACCACCATCCTTTCTACTTTTCTCCC
CCTATTTCCCTTCCCCCCCTTCCTTATTTAACCAAATATTTTATTTAACA
CTCTACCATTTCCCCCCCCCCCCTTTTTTTTTCTTATACTCTTTTATCCT
CCCCCCTCAATTTACCCCCTCACCAAATTATCTCC

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGT
CTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGTATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGT
ACACCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAAC
ACATGAAACTCAAGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j16.b1 MSMg01no139_j16.b1 CHROMAT_FILE:
MSMg01no139_j16.b1 PHD_FILE: MSMg01no139_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:03 2005
         (327 letters)



>mm_chr1_77631449_77632175
          Length = 727

 Score =  578 bits (299), Expect = e-169
 Identities = 317/323 (98%), Gaps = 1/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagtagcttctc-cggacactgggaatttttcacttatctacttttcttcctaaa 64
           ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcagtagcttcacacggacactgggaattttttacttatctacttttcttcctaaa 264

                                                                       
Query: 65  attaaatttgtgttttcattttagcaactgtgtgcttctgcatatgtatgtgtgtatatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaatttgtgttttcattttagcaactgtgtgcttctgcatatgtatgtgtgtatatg 324

                                                                       
Query: 125 tgtacagatgtgtgttggtatgtgtgtgtacatgcatgcatatgtgcatgtgtgtgtggg 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtacagatgtgagttggtatgtgtgtgtacatgcatgcatatgtgcatgtgtgtgtggg 384

                                                                       
Query: 185 catgcatatgcatgtgtacatgtatgcatttacataggagcacacgtgctgtggtgcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 catgcatatgcatgtgtacatgtatgcatttacataggagcacacgtgctgtggtgccta 444

                                                                       
Query: 245 cgtgcaagccacagaacaactttctggagttggttctcaatttgcaacttgttttgagtc 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgtgcaagccacagaacaacattctggagttggttctcaatttgcaacttgttttgagtc 504

                                  
Query: 305 agggtctcttgaagatctgggaa 327
           |||||||||||||||||||||||
Sbjct: 505 agggtctcttgaagatctgggaa 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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