Query= MSMg01no139_l17.b1 MSMg01no139_l17.b1 CHROMAT_FILE:
MSMg01no139_l17.b1 PHD_FILE: MSMg01no139_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
(276 letters)
>mm_chr1_121637799_121638475
Length = 677
Score = 497 bits (257), Expect = e-145
Identities = 272/277 (98%), Gaps = 1/277 (0%)
Strand = Plus / Plus
Query: 1 ggatttcattgttactttgatccttcaaaataaataaatacatgacactctaaaataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatttcattgttactttgatccttcaaaataaataaatacatgacactctaaaataatt 260
Query: 61 aaaacaggattaattttt-taaaaaaacacatttcaaagataacacaaaatttaattgta 119
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaggattaatttttaaaaaaaaacacatttcaaagataacacaaaatttaattgta 320
Query: 120 cctaataataaatcctaacagtttgttattgcctcataaaagcctagttggccatcattg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaataataaatcctaacagtttgttattgcctcataaaagcctagttggccatcattg 380
Query: 180 ggaagagaagccccttggtcttgcaaactttatatgccttagtataggggaacaccaggg 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagagaggccccttggtcttgcaaactttatatgccttagtataggggaacaccaggg 440
Query: 240 ccaggaagtgttagtaagtgggtaggggagtggaggg 276
|||||||||| |||||||||||||||||||||||||
Sbjct: 441 ccaggaagtgggagtaagtgggtaggggagtggaggg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no139_l17.g1 MSMg01no139_l17.g1 CHROMAT_FILE:
MSMg01no139_l17.g1 PHD_FILE: MSMg01no139_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
(634 letters)
>mm_chr1_121805944_121806977
Length = 1034
Score = 1195 bits (618), Expect = 0.0
Identities = 630/634 (99%)
Strand = Plus / Minus
Query: 1 tatgagaagattctgtcaggaaacttagccctacgcagtcttttgggcagacaaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tatgagaagattctgtcaggaaacttagccctacgcagtcttttgggcagacaaggagaa 775
Query: 61 aagctgtatacaccaagtggaaacattgtccccagacactggtttcgcatcaaccatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aagctgtatacaccaagtggaaacattgtccccagacactggtttcgcatcaaccatttg 715
Query: 121 ccctacaccacccgccgggactctctacaacagatgtggagggcgacagtcagcccaggc 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 714 ccctacaccacccgccgggactctctacaacagatgtggagggcaacagtcagcccaggc 655
Query: 181 cgcttctgagaatccaggcaacagggcaatcctggcttgcataggcactgcctcgtgatg 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 654 cgcttctgagaatccaggcaacagggcagtcctggcttgcataggcactgcctcgtgatg 595
Query: 241 aacttgagatgaatctcttagtgtggttgcacccacagcccagggtcagaagagtgactg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 594 aacttgagatgaatctcttagtgtggttgcacccacagcccagggtcagaagagtgaccg 535
Query: 301 tctttggagttaaacaattcaactctgtcctcgccatgaatagactctggctgagcatga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 534 tctttggagttaaacaattcaactctgtcctcgccatgaatagactctggctgagcgtga 475
Query: 361 gtccctatatgaatcttgagtcttgtttacctcaactatgaagtggggaggactgattgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtccctatatgaatcttgagtcttgtttacctcaactatgaagtggggaggactgattgt 415
Query: 421 agggttgtatgagattgtgagcctgagggcctggtagaacgcagcataaataaacagggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agggttgtatgagattgtgagcctgagggcctggtagaacgcagcataaataaacagggc 355
Query: 481 tttcttccctagtggtctctgaattccagtggactgtggaagtcaaaccatgagtcacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttcttccctagtggtctctgaattccagtggactgtggaagtcaaaccatgagtcacca 295
Query: 541 ccagacatgtttctgatatatccaccctttctttcttgcagtggagaactgccctaatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccagacatgtttctgatatatccaccctttctttcttgcagtggagaactgccctaatct 235
Query: 601 accagatagcatatagctaatttatcccttgcct 634
||||||||||||||||||||||||||||||||||
Sbjct: 234 accagatagcatatagctaatttatcccttgcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
