BAC Information

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BAC

Clone NameMSMg01-139M08
Chromosome1 (Build37)
Map Location 51,037,766 - 51,038,011
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139M08.T7 (MSMg01no139_m08.b1)MSMg01-139M08.TJ (MSMg01no139_m08.g1)
ACCAG345086AG345087
length718716
length of high quality
(start - end)
---239 (432 - 670)
definitionCHROMAT_FILE: MSMg01no139_m08.b1 PHD_FILE: MSMg01no139_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:16 2005CHROMAT_FILE: MSMg01no139_m08.g1 PHD_FILE: MSMg01no139_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTGTCTCACTTGCTGCTTCCAGATGGTTTCCGCTTGTTATG
GACTCCACGAAAACGGCACATTTCTCTCCTTTTTTCCTCAGTTTAAAAGA
TACATCAACAACACTGAGGATGGGTACTCATGGTAACAAAGTGAATGCCC
CTGACCTTTTATATGTGGCACAGCCACAAACAAGAGTGCATATAGCGGAT
TTGAAAACTGCTTGGCTAATAAATATAAGAGTTGTTTCATTAAAAGGGAT
TTACACTGGTCTCTATAAATATTTATGATAAATATTTTGCATTGTTTCAT
TTTCTGACTTTTGGTTTTCCAAGACAGCGTGGCTTTCAATAGTCTTGGTT
ATGCTGTAACTCACTTACATAATTTTCAATTTAAGTCTTTGCGCGTGTAT
GTGTGTGAGAGTGAGTGTCATAAGAGTCCTCTTATTTCTTGGTTCTTACC
AGTCTTTCTGCCTCATGATCTTAGCCATTCTGGCTGGGGTAAGATGAAAT
CTCAATGTAGCGTCAGTTTTTAATTCCCTAGTCCTCAAGGATCTAGTATT
CCACTTACGACATTTTTAACTCACTTCTTTTCCTCCTTATAGAACTTTCC
ACCGCAAATCGCGGCATTTTCTAAACCGCGCCGCTTGCACTCTAACCCGC
CTATCCCATTAGTCCCCA
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAATGAAACCGAGGATCTTCATG
CAGTGCTTGCTTCTACTTCTTCCCTGTCTTAATCTCATACATTCACAACT
CTGTTGCCTAAGAAATATCAACACTAATAGGCCACTCACAAGAGAGCTCC
ACGGTCCTGATTCTCATACTGAAGTTTGAAGGTGAGCGCAGGCACAAGCT
GAGCTTCCCTCAGTGCTTCCTCCGCCCCACTCACTCTGCTAGCCTCTCCT
TGTACGCACACCCACTCACACGTATTTTTGGAGGCAGAGGAGTACTGCTT
GCTTCTGTGGAAATTAAGTTGCAGAAGACAATAAATGTTGACATGAAACT
GAAATACACTCACCAGGCTGGTAAGAGCTTCTGGAGAAAGCGTCCTCTGG
ATGCCATTCTGGGGTTCCCAGCTCCCTTCAACTCAGCAAACTCTAGAAGA
CAATGAGCTGGATTTGAAAGCAAAATTAGAGGCTTAGAAGCCATGGGCAT
CAAAAGATTGTTTGCTTGTGGTGCAGGGAGATGGAGAAAAATAAGCAGGT
CTCTAGTTCATTATTGCCAATCTTTTTTATATAGAGAGAGATGTTTTGGA
CCTTAGGGACCTCCTAGACACCGAAGATAATCTAAAAATACACTTGTTTC
CATTTTTAAAAAGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_m08.g1 MSMg01no139_m08.g1 CHROMAT_FILE:
MSMg01no139_m08.g1 PHD_FILE: MSMg01no139_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:16 2005
         (239 letters)



>mm_chr1_51037566_51038204
          Length = 639

 Score =  402 bits (208), Expect = e-117
 Identities = 234/246 (95%), Gaps = 7/246 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagaaagcgtcctctggatgccattctggggttcccagctcccttcaactcagcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggagaaagcgtcctctggatgccattctggggttcccagctcccttcaactcagcaaac 260

                                                                       
Query: 61  tctagaagacaatgagctggatttgaaagcaaaattagaggcttagaagccatgggcatc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagaagacaatgagccggatttgaaagcaaaattagaggcttagaagccatgggcatc 320

                                                                       
Query: 121 aaaagattgtttgcttgtggtgcagggagatggagaaaaataagcaggtctctagttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagattgtttgcttgtggtgcagggagatggagaaaaataagcaggtctctagttcat 380

                                                                       
Query: 181 tattgccaatcttttt-----tatatagaga--gagatgttttggaccttagggacctcc 233
           |||||||| |||||||     |||||| | |  ||||||||||||| |||||||||||||
Sbjct: 381 tattgccagtctttttggttttatatatatatggagatgttttggatcttagggacctcc 440

                 
Query: 234 tagaca 239
           ||||||
Sbjct: 441 tagaca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)