Query= MSMg01no139_o02.b1 MSMg01no139_o02.b1 CHROMAT_FILE:
MSMg01no139_o02.b1 PHD_FILE: MSMg01no139_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:25 2005
(313 letters)
>mm_chr1_180299704_180300412
Length = 709
Score = 542 bits (280), Expect = e-158
Identities = 301/308 (97%), Gaps = 4/308 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaactgctaatcgaaataaaacctccatcaaggactgtcaacggtagctacatt 63
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 507 ggaattcaactgctaat-gaaataaaacctccagcaaggactgtcaacggtagctacatt 449
Query: 64 cataattaagatgatggacaacgttataaaggactattccaggtggacaacacctgaagc 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cacaattaagatgatggacaacgttataaaggactattccaggtggacaacacctgaagc 389
Query: 124 cattgatcaccttgatatcatgggaggaaagatagtataggctcttcctttngatgtctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct: 388 cattgatcaccttgatatcatgggaggaaagatagtataggctcttccttt-gatg-cgc 331
Query: 184 taggaagtctgcgctgaatcagcatccccagccagtaaaggaacatgacaatcaagtgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taggaagtctgcgctgaatcagcatccccagccagtaaaggaacatgacaatcaagtgtg 271
Query: 244 aggatcttacttcaattcctgagatcagagtgatggagggtgtgaacagacttctacact 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aggatcttacttcaattcctgagatcagagtgatggagggtgtgaacagacttctacac- 212
Query: 304 gttgtact 311
||||||||
Sbjct: 211 gttgtact 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 709
Length adjustment: 9
Effective length of query: 304
Effective length of database: 700
Effective search space: 212800
Effective search space used: 212800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_o02.g1 MSMg01no139_o02.g1 CHROMAT_FILE:
MSMg01no139_o02.g1 PHD_FILE: MSMg01no139_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:25 2005
(578 letters)
>mm_chr1_180157419_180158395
Length = 977
Score = 1060 bits (548), Expect = 0.0
Identities = 574/590 (97%), Gaps = 13/590 (2%)
Strand = Plus / Plus
Query: 1 tctctctctcctcgatggtgaacaaggtctgtaaaagctgttgacagtcattccaagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tctctctctcctcgatggtgaacaaggtctgtaaaagctgttgacagtcattccaagtag 248
Query: 61 gctaagaaagaacatcagggactctaccaagcctgtaaggccaacaggattttctggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gctaagaaagaacatcagggactctaccaagcctgtaaggccaacaggattttctggaaa 308
Query: 121 aggagggtgattaatcttctagttataaagatcagaggaagaaaagggccaatattataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aggagggtgattaatcttctagttataaagatcagaggaagaaaagggccaatattataa 368
Query: 181 gagttgtaaggcattctgatcagatgagggtggcccaacagccctaaggggaaggaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gagttgtaaggcattctgatcagatgagggtggcccaacagccctaaggggaaggaccat 428
Query: 241 ggtgtagttgaccggtccttcaggggtggctcttcatcggctcctcgttcctgtcgaggg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 429 ggtgtagttgaccggtccttcaggggtggctcttcatcggctccttgttcctgtcgaggg 488
Query: 301 acctcttcctctggtcctagagactggggccaga------------ggggtcaagggttg 348
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 acctcttcctctggtcctagagactggggccagaaaaggggccagaggggtcaagggttg 548
Query: 349 gggttcaggttggggggcttgaagatagggtgggggcaagggagcaggccactcaggagg 408
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 549 gggttcaggttggggggcttgaagatagggtgggggcaaaggagcaggccactcaggagg 608
Query: 409 ctcttctatctcagggtacatcttagggactaggctgtggcttcggcttctcctttgcag 468
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctcttctatctcagggcacatcttagggactaggctgtggcttcggcttctcctttgcag 668
Query: 469 cactctctcgaacagctaggatcttggagccgggaagacagggtgggaggaatggccaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cactctctcgaacagctaggatcttggagccgggaagacagggtgggaggaatggccaga 728
Query: 529 cccactgggggtggggattgtgccaggtcctcccacaccatgatgtacag 578
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cccactgggg-tggggattgtgccaggtcctcccacaccatgatgtacag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
