Query= MSMg01no140_c05.b1 MSMg01no140_c05.b1 CHROMAT_FILE:
MSMg01no140_c05.b1 PHD_FILE: MSMg01no140_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:46 2005
(646 letters)
>mm_chr1_116590748_116591793
Length = 1046
Score = 1156 bits (598), Expect = 0.0
Identities = 628/638 (98%), Gaps = 1/638 (0%)
Strand = Plus / Plus
Query: 10 ttcaaaagtgtctcaactgtccgtatttcttttatattttaaaactctgaaatagagggc 69
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 209 ttcaaaagtgtatcagctgtccgtatttcttttatattttaaaactctaaaatagagggc 268
Query: 70 caacaagatggctcagtgggaaaaa-ttgattttgctgcatctgacaacctgaatttcac 128
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 269 caacaagatggctcagtgggaaaaaattgattttgctgcatctgacaacctgaatttcac 328
Query: 129 ccacagaatccacatgttaaaagaaaagttcagacatctacaagttgctccttgtcttcc 188
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 329 ccacagaatccacatgttaaaagaaaagatcagacatctacaagttgccccttgtcttcc 388
Query: 189 aaacacattctacagcatgtagccccattacagcaaacaaacaaatacataagaaaagaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaacacattctacagcatgtagccccattacagcaaacaaacaaatacataagaaaagaa 448
Query: 249 attaaactatttccaacaaagtgaaaggtgagagaaaacagagattggatgatgaattag 308
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 449 attaaattatttccaacaaagtgagaggtgagagaaaacagagattggatgatgaattag 508
Query: 309 atgaatccagctgctcaaagcataaggttaattcatttttaggaaactgaattttattga 368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 509 atgaatccagctgctcaaagcataaggttaattcattttcaggaaactgaattttattga 568
Query: 369 aattctgggttgatatttgacttacacttttttcttttcataatgtgacttgtaattcta 428
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 569 aattctgggttgatatttgacttacacttttttcttttcataatgtgatttgtaattcta 628
Query: 429 ttttaaaattacctttatccaaataggcaagatttgtttttaatttaattttcaaggtta 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttttaaaattacctttatccaaataggcaagatttgtttttaatttaattttcaaggtta 688
Query: 489 ttaatatcttgcccatcactggttatttcctttccccacaaacacataggtatcacagat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttaatatcttgcccatcactggttatttcctttccccacaaacacataggtatcacagat 748
Query: 549 ataaacttggctatttcagggtagagagtattatggagtatttccatacccttggtatgg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ataaacttggctatttcagggtagagagtattatggagtatttccatacccttggtatgg 808
Query: 609 aaaataagatgaatttataatagtaatgaattataatt 646
||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aaaataagatgaatttataatagtaatgaattataatt 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_c05.g1 MSMg01no140_c05.g1 CHROMAT_FILE:
MSMg01no140_c05.g1 PHD_FILE: MSMg01no140_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:46 2005
(563 letters)
>mm_chr1_116748999_116749961
Length = 963
Score = 982 bits (508), Expect = 0.0
Identities = 550/564 (97%), Gaps = 2/564 (0%)
Strand = Plus / Minus
Query: 1 tcttggagggtttatttatgtgcatgcacagtgggacagtacaaaactggaacactgcag 60
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 763 tcttggagggtttatttatgtgcatgcacagtgggacagtacagaactagaacactgcag 704
Query: 61 gaagtattgcttggtcaccaactttgaaacattgtttagctacaaattctaagtgacctg 120
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaaatattgtttggtcaccaactatgaaacattgtttagctacaaattctaagtgacctg 644
Query: 121 ggcagggatttttttagttatggagcttggagtaagggacaggggcagggacagaatgat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 643 ggcaggg-gttttttagttatggagcttggagtaagggacaggggcagggacaggatgat 585
Query: 181 tatgcattggtctgttatcctacaaaacagatatataaccactggcataatgactctgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tatgcattggtctgttatcctacaaaacagatatataaccactggcataatgactctgta 525
Query: 241 aatttaaataccattttgcacaattgatgtgctccatatcaaatttattctgaattatgt 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 524 aatttaaatatcattttgcacaattgatgtgctccatatcaaatttattctgaagtatgt 465
Query: 301 actctagaaaattgtttatagacaag-aaaaaagcgtaaaaatatttatataataagtgt 359
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 464 actctagaaaattgtttatagacaagaaaaaaagcataaaaatatttatataataagtgt 405
Query: 360 ataataggaaatgtatgcccacaggaaatacttgagttaattacatattttatcattgca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ataataggaaatgtatgcccacaggaaatacttgagttaattacatattttatcattgca 345
Query: 420 tataattcagcaataaagagaaacgattttggaaactcagcatgaatacatttatgaagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tataattcagcaataaagagaaacgattttggaaactcagcatgaatacatttatgaagt 285
Query: 480 acaatttctaatggacatatagtgttaaattagataggtggatagataatttaattcaag 539
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284 ataatttctaatggacatatagtattaaattagataggtggatagataatttaattcaag 225
Query: 540 tcattaaaaattaatgaaacaaaa 563
||||||||||||||||||||||||
Sbjct: 224 tcattaaaaattaatgaaacaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
