Query= MSMg01no140_c14.b1 MSMg01no140_c14.b1 CHROMAT_FILE:
MSMg01no140_c14.b1 PHD_FILE: MSMg01no140_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:48 2005
(496 letters)
>mm_chr1_164408510_164409406
Length = 897
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 6 gaattccttgcctgatcca-ctgtccttttagctcctggtcaggacaaagagattggctg 64
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttgcctgagctaactgtccttttagctcctggtcaggacaaagagattggctg 265
Query: 65 ttgagtccattgtaaccacgcagtctgcactcgatccgttaaatttagcacactgagaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgagtccattgtaaccacgcagtctgcactcgatccgttaaatttagcacactgagaag 325
Query: 125 agtctgtgcccggagatggagacacgaagataaatggccatggttcttcacctccttatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtctgtgcccggagatggagacacgaagataaatggccatggttcttcacctccttatc 385
Query: 185 gtggtcctgtttcctgtgcattttgaatactgacacctctcaggatttagtgcgcaatat 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 gtggtcctgtttcctgtgcattttgaatactgatacctctcaggatttagtgcgcaatat 445
Query: 245 ttacttgtcctgcacatcttccatctgatgattgcccaatggctttaagtaacctaaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttacttgtcctgcacatcttccatctgatgattgcccaatggctttaagtaacctaaaga 505
Query: 305 ctagagactacataggaaaatgtgttgcatctctagcaccctggggtcttcactgtcact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctagagactacataggaaaatgtgttgcatctctagcaccctggggtcttcactgtcact 565
Query: 365 taggcatcaccattgcactattgcccttctaggacaacagtgaaccaagtctgagcctgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taggcatcaccattgcactattgcccttctaggacaacagtgaaccaagtctgagcctgc 625
Query: 425 cccacgtttcctaggctaggtggctctctggatatgctatatgatagctgagtcagtctt 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cccacgtttcctaggctcggtggctctctggatatgctatatgatagctgagtcagtctt 685
Query: 485 tcacttttcatg 496
||||||||||||
Sbjct: 686 tcacttttcatg 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_c14.g1 MSMg01no140_c14.g1 CHROMAT_FILE:
MSMg01no140_c14.g1 PHD_FILE: MSMg01no140_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:48 2005
(301 letters)
>mm_chr1_164505509_164506209
Length = 701
Score = 567 bits (293), Expect = e-166
Identities = 299/301 (99%)
Strand = Plus / Minus
Query: 1 cagcgactgggcagaaagtgacaggtgactacatggggtttacactgttgtggaaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcgactgggcagaaagtgacaggtgactacatggggtttacactgttgtggaaaatca 442
Query: 61 ttctgcagagatgaaacttaaactgaagttcacatgataataaagagtcagccaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgcagagatgaaacttaaactgaagttcacatgataataaagagtcagccaaaaata 382
Query: 121 ataaacagggtattcactgcccataggcgaacggctggcacagacaaagtccgatagtat 180
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 agaaacagggtattcactgcccataggcgaacggctggcacagagaaagtccgatagtat 322
Query: 181 tattgacattaaatgaatgaccctattaaaatcaaaattttatatgaccggaataccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgacattaaatgaatgaccctattaaaatcaaaattttatatgaccggaataccaca 262
Query: 241 aagtctagccaatatttttttttcaagaaattcacccaatgtaaatgtcaaataaagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctagccaatatttttttttcaagaaattcacccaatgtaaatgtcaaataaagagt 202
Query: 301 a 301
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
