BAC Information

Click to search

BAC

Clone NameMSMg01-140D01
Chromosome1 (Build37)
Map Location 21,444,637 - 21,444,949
singlet/doubletsinglet
Overlap geneKcnq5
Upstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076
Downstream geneD1Mgi28, LOC435612, LOC100040338, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140D01.T7 (MSMg01no140_d01.b1)MSMg01-140D01.TJ (MSMg01no140_d01.g1)
ACCAG345398AG345399
length711714
length of high quality
(start - end)
322 (288 - 609)434 (75 - 508)
definitionCHROMAT_FILE: MSMg01no140_d01.b1 PHD_FILE: MSMg01no140_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:50 2005CHROMAT_FILE: MSMg01no140_d01.g1 PHD_FILE: MSMg01no140_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAAGCCGCG
GAATTCTATACTTTCCCGATAAGCCTGAAGGAAAGAAAATTCCAAAGACT
AGAATCACCACTACCTATCCTAGCATTTTCTGTTTCTCCAAAGGTATCTC
AGAAGTCAGATATTAAAAAAAAATTAAAAATCCTGTTTTACCAAATCACA
GATTGGAAAGGTCATACATGCTAGATCATTTCATACAAGTGCAATTCGGT
TTGCTTAGAAAAGAATTGCTTTTCCCTGGGTGAGCCCCTTCTCAATCGAT
TCTGAACTCCCCAAGTGGGGACAGGGCTGATTGCTGCCCTGTTGAAGAAG
CTCTGAGGGCTCCTCACTGGCAGGAGATGGTAGCTCCTGACTTCTCCTTC
AAGCCAATAGCCAAAAGTCTTTACTTATGATTTAACTTGAAATTGGGTCT
TGGAAATTTTCAAGTACATTTTTTACAGAAAAAAAAAATAATAAAGTAGC
CATCAAGTAAATGTGTCCTTCAATTAGGTGTATACATTATCTTCGGTGTC
TCTCCAGGTTACGAGTATGCCACTTATTGCCCATAGAATATAATGTGTAA
TAACGCTAGAGCCGACTCCCAGTCATCCCTGGTCCACTCATTTGTTTGTT
TCTGGAGCCTTTGTGAATTGGTCCTTTACATCTCATTACGCATCAGCATT
CTCAAGGAGCG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGACACTTAGGACTACCCAGACCA
ACCCTGTCTCAAAAAACAACCCCCCTCAAAGGAATGCTAATGAAAGATTC
TCGAATTCCCGGCCAATGCACCAAATGAAAGATTCTCAAATTCCCGGCCA
ATGCATCAAATGAAAGACCCCCGAAGGGAGACCCTCACTCAGACACTCAA
GTCCCGGGACAGCCGCGTACCCAAGAAGACACTGAGACCATACATAAAAT
GTAGAAGGCAAGATTTAATAAAGTAGCAACATGAAAGCACACAGACCAGA
GCTCTGGGGTCGAAATAAAGCAGCAACATGAAAGCACACAGAGCTCTGGG
GTCGAAACTCATACACCTTATCACAGGGTAGAGGAGTCTCGACGACGACT
CAAATTTTTCACAAGCTTTTAAAGGAAAAAACCACAAACTGGGAGGGGGA
ATGGGGAGGGAATAGGGGAAGCTTTTTCTCCTTCTCCTTATCTTGTCTCC
ATATTCCCTTTCTCTGTATCCCCTATTCCTCCTTTTTCCTAAACCCTTTT
CCCCTTTTTCTTACCCCTCTCCTTCTCCCTTTTTTTCCCCCTTCATTTCC
ACCCCTCCCCCCCCTTCTATTCCCCCCTTCTTTCCCCCCCTCTCCCCTCT
TTTTCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_d01.b1 MSMg01no140_d01.b1 CHROMAT_FILE:
MSMg01no140_d01.b1 PHD_FILE: MSMg01no140_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:50 2005
         (322 letters)



>mm_chr1_21444366_21445087
          Length = 722

 Score =  565 bits (292), Expect = e-165
 Identities = 311/322 (96%), Gaps = 9/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctcaatcgattctgaactccccaagtggggacagggctgattgctgccctgttgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cttctcaatcgattctgaactccccaagtggggacagggctgattgctgccctgttgaag 525

                                                                       
Query: 61  aagctctgagggctcctcactggcaggagatggtagctcctgacttctccttcaagccaa 120
                  ||  |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 524 -------ga--gctcctcactggcaggagatggtagctcctgacttctccttcaatccaa 474

                                                                       
Query: 121 tagccaaaagtctttacttatgatttaacttgaaattgggtcttggaaattttcaagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tagccaaaagtctttacttatgatttaacttgaaattgggtcttggaaattttcaagtac 414

                                                                       
Query: 181 attttttacagaaaaaaaaaataataaagtagccatcaagtaaatgtgtccttcaattag 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attttttacagaaaagaaaaataataaagtagccatcaagtaaatgtgtccttcaattag 354

                                                                       
Query: 241 gtgtatacattatcttcggtgtctctccaggttacgagtatgccacttattgcccataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtgtatacattatcttcggtgtctctccaggttacgagtatgccacttattgcccataga 294

                                 
Query: 301 atataatgtgtaataacgctag 322
           ||||||||||||||||||||||
Sbjct: 293 atataatgtgtaataacgctag 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)