Query= MSMg01no140_d02.b1 MSMg01no140_d02.b1 CHROMAT_FILE:
MSMg01no140_d02.b1 PHD_FILE: MSMg01no140_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:50 2005
(488 letters)
>mm_chr1_53653193_53654080
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Plus
Query: 5 gaattcagccacctcactcagtacacatccaatactgaaatcagcctgttgaacagacat 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccacctcactaagtacacatccaatactgaaatcagcctgttgaacagacat 264
Query: 65 ctccactccaacacaaattacatagccaagaaaggcaaacaaccagacacatacatggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccactccaacacaaattacatagccaagaaaggcaaacaaccagacacatacatggct 324
Query: 125 gaaccaagacctggttgtttgtgacaacacaccaggcccaggaacacagaatgtcctcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaccaagacctggttgtttgtgacaacacaccaggcccaggaacacagaatgtcctcat 384
Query: 185 tcatgtaaggaatcttaaaacagttggcctcatagaagtcgagattagactggtgactac 244
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 385 tcatgtaaggaatcttaaaactgttggcttcatagaagtcgagattagactggtgactac 444
Query: 245 cagaagctgagtaaccagaggaggagggaggtgtagggaaagtttgacagatagtgcatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaagctgagtaaccagaggaggagggaggtgtagggaaagtttgacagatagtgcatt 504
Query: 305 gcagaaaggcaggagtgtgctactgaacagcagtaacatgataataataaactgtaatac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagaaaggcaggagtgtgctactgaacagcagtaacatgataataataaactgtaatac 564
Query: 365 ctcaaatagaagaaatctcttagaaagcttccccataaaagattaatgggtacttaagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcaaatagaagaaatctcttagaaagcttccccataaaagattaatgggtacttaagga 624
Query: 425 gatggaaatccctgaacgtccttgataagaggttgtctgtcttatgacccacctgcaaaa 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatggaaatccctgaacatccttgataagaggttgtctgtcttatgacccacctgcaaaa 684
Query: 485 ggaa 488
||||
Sbjct: 685 ggaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_d02.g1 MSMg01no140_d02.g1 CHROMAT_FILE:
MSMg01no140_d02.g1 PHD_FILE: MSMg01no140_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:51 2005
(427 letters)
>mm_chr1_53790647_53791470
Length = 824
Score = 745 bits (385), Expect = 0.0
Identities = 416/429 (96%), Gaps = 7/429 (1%)
Strand = Plus / Minus
Query: 1 actcagagct-aaaaggatgtctttgccggagactccttgagttttctcccagatttccc 59
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 actcagagctaaaaaggatgtctttgctggagactccttgagttttctcccagatttccc 565
Query: 60 ttgttccgagcgctcctcagacactgtagtcctcactgctagcatctctgtgggaatgtg 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 ttgttccgagcgctcctcagacactgtagtcctcactgc-----tctctgtgggaatgtg 510
Query: 120 ttttgagacaaagctacttctgaaaaacagaatgttctggtgggtttggctccacagcac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttttgagacaaagctacttctgaaaaacagaatgttctggtgggtttggctccacagcac 450
Query: 180 cacagagatgctggcactgggctgcagacacatgtccagaagtgctgtttgcaattgtga 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 cacagagatgctggcactgggctgcagacacacgtccagaagtgctgtttgcaattgtga 390
Query: 240 tagcaatcttactaaaaataagggcttttttttttttt-ccagttcacagaggtgtgggt 298
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 389 tagcaatcttactaaaaataaggacttttttttttttttccagttcacagaggtgtgggt 330
Query: 299 agaagacaggctgccgctgtcctccagtctcctgaaggcctttcatttcctgttggatgt 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agaagacaggctgccgatgtcctccagtctcctgaaggcctttcatttcctgttggatgt 270
Query: 359 tgatgtttcaaagcttccacatgaattattggaatgtccataaatattttttcacttcag 418
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 269 tgatgtttcaaagcttccacataaattatgggaatgtccataaatattttttcacttcag 210
Query: 419 tttttgttc 427
|||||||||
Sbjct: 209 tttttgttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 824
Length adjustment: 9
Effective length of query: 418
Effective length of database: 815
Effective search space: 340670
Effective search space used: 340670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
