BAC Information

Click to search

BAC

Clone NameMSMg01-140E08
Chromosome1 (Build37)
Map Location 63,733,887 - 63,734,069
singlet/doubletsinglet
Overlap genenone
Upstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215
Downstream geneMdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140E08.T7 (MSMg01no140_e08.b1)MSMg01-140E08.TJ (MSMg01no140_e08.g1)
ACCAG345457AG345458
length712709
length of high quality
(start - end)
183 (71 - 253)---
definitionCHROMAT_FILE: MSMg01no140_e08.b1 PHD_FILE: MSMg01no140_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:57 2005CHROMAT_FILE: MSMg01no140_e08.g1 PHD_FILE: MSMg01no140_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCCGCGGAA
TTCACAATTCCTTCCTCGATATGAATAGAATTTAATGTCTTATTTCTAAA
GAAGTCCAGGTTTAAAATTTAGCTGTTTTAGTCTTGTTAGGATTTTTAAA
CTGTGTTATCACACAGACCAAATGTATTAAAACATTAAGGATGTCAAGCA
GCCGTGTAATCAATTGAAACTTATTCCAAAAACATCTGAGGCTGCCCGGA
TGGGACAGTGTGGAAAAGTACTTACTGATCACCAAGCCTGTGTAATTCGC
GGCTAATCCTAGAACTCACATTGTTAGAGGAGAGAATCAACTCCTTCAAA
CTGTCCTCTGTCTTATGCACTCCCCACCCGATAACATATAGATATAGACA
GTTTGATAGACATATACTTATTACATTAGACAGACACTTATATACTTATA
CATACTCCATCATATTGTACTATACATATTCTTTATCCACTGTTTTATAA
CGATACATATATACCCTATATCTCTTCCTTTTGCTCCTTTCCATTATACC
TCCTTCCATTTTCCTTCCATCATATTTTTTTACCCCTTCGTTCTTTCATT
TTATTTTTTGACCATCTATTTTTCCTGCATATTTTTTTCCCTTTCTTGCC
TTATACCTTTTCCCATTTTTCCCCTTTTTCTTTTTTCTTAATCCCACCCC
CTTTTTCCTGCT
AATGCAGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCTAATTCACAGTCTGGTCTCATATCAAGCACGCTA
AAATATGCATAGCCATCCCTGCCTTCCCGACTGACACAGGACTGCTTTGA
TCTTCACACAGCACACGCTACTCAAGTTTCGCGAATATTAACAAGGGTAC
TGTGCGAATTTAACAATGTCATTATATCGCATCAATATAACTCATTATAC
AACGCATAATGAATTGGCTCCTAATCTTCTGTATATTATGGCTAAAAGAA
GCTCTACTATTTGCAGCAAGATAAACCTTTAGCATATCCATCAAGTCGAG
TCCTGCTTACACTCCGCTCATCAACTCTAATCACCTATGAACTACTTGAA
CTAAGCTAACACGCCTCCCCCAGAGCCACTACTTCCCGCTATTCGACTAC
CAGCTTTTAACTTCTATCGAACGTCTCCACTTCACGCACTATCACAGATC
CCACTCTCATCTTCATCTTCCCCTAATGATATACGCGACCTCCGACCTCG
CATCCACTCTCAGTCTCCTCTTTATTCTCTGTCATACCACTCTCAGCTGC
TCCCCACTTACTGCTCCACTCCTTCCCCCGTGCTTTCTTTCCATAGACTC
ATCTCGTCTGCTCTGCTACTTCCTAATATTTCTTTACTTATACATCCTAC
TACTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_e08.b1 MSMg01no140_e08.b1 CHROMAT_FILE:
MSMg01no140_e08.b1 PHD_FILE: MSMg01no140_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:57 2005
         (183 letters)



>mm_chr1_63733687_63734269
          Length = 583

 Score =  315 bits (163), Expect = 8e-91
 Identities = 178/183 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatagaatttaatgtcttatttctaaagaagtccaggtttaaaatttagctgtttta 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaatagaatttaatgtcttacttctaaagaagtccaggtttaaaatttagctgtttta 260

                                                                       
Query: 61  gtcttgttaggatttttaaactgtgttatcacacagaccaaatgtattaaaacattaagg 120
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gtcttgttaggatttttaaacagtgttatcacacaaaccaaatgtattaaaacattaagg 320

                                                                       
Query: 121 atgtcaagcagccgtgtaatcaattgaaacttattccaaaaacatctgaggctgcccgga 180
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 atgtcaagcagccgtggaatcaattgaaacttattccaaaaacatctgaggctgcctgga 380

              
Query: 181 tgg 183
           |||
Sbjct: 381 tgg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)