Query= MSMg01no140_f04.b1 MSMg01no140_f04.b1 CHROMAT_FILE:
MSMg01no140_f04.b1 PHD_FILE: MSMg01no140_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:01 2005
(514 letters)
>mm_chr1_101164000_101164914
Length = 915
Score = 940 bits (486), Expect = 0.0
Identities = 504/510 (98%), Gaps = 1/510 (0%)
Strand = Plus / Minus
Query: 6 gaattcagctttgttt-caataggaaagcaatgataagttgcttttgataacatttggca 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattcagctttgtttaaaataggaaagcaatgataagttgcttttgataacatttggca 656
Query: 65 tttatgtcttattatacctcataaactatagactatgacttgcacattaaaataggtttc 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 655 tttatgtcttattatacctcataaactatagactatgacttgcacactaaaataggtttc 596
Query: 125 ctatgctatttggtgagaactcagttagtgaagtgtttgtcatacaataatcaggacttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctatgctatttggtgagaactcagttagtgaagtgtttgtcatacaataatcaggacttt 536
Query: 185 tatttgtgttctgttaattcattccttcctgtttctagactcttttgcttcataattgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tatttgtgttctgttaattcattccttcctgtttctagactcttttgcttcataattgtc 476
Query: 245 atatcttcagctattaattcaacttccttgaatcaagtggtcagtacttgtgttgcaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atatcttcagctattaattcaacttccttgaatcaagtggtcagtacttgtgttgcaaag 416
Query: 305 acataagtgcagacaaaaacctcaaacacgttaaaataaaaatattttagaaagtgcaat 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acataagtgcggacaaaaacctcaaacacgttaaaataaaaatattttagaaagtgcaat 356
Query: 365 tactacaaggggaacatggtaatgaacaatagatatgtgtacccaaattttaattgctta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tactacaaggggaacatggtaatgaacaatagatatgtgtacccaaattttaattgctta 296
Query: 425 gtttagaaaaatagcaaggagatacagagataatttcatagggcatagtcactcagtatc 484
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 295 gtttagaaaaatagcaaggagatacagagataatttcataggacagagtcactcagtatc 236
Query: 485 ttatctttggactctctcctattttggata 514
||||||||||||||||||||||||||||||
Sbjct: 235 ttatctttggactctctcctattttggata 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space: 456120
Effective search space used: 456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_f04.g1 MSMg01no140_f04.g1 CHROMAT_FILE:
MSMg01no140_f04.g1 PHD_FILE: MSMg01no140_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:01 2005
(468 letters)
>mm_chr1_101035501_101036368
Length = 868
Score = 826 bits (427), Expect = 0.0
Identities = 458/469 (97%), Gaps = 3/469 (0%)
Strand = Plus / Plus
Query: 1 acagacaaggggaccagaccaagaaacagacttgagggttgcagaagacgtagt-accat 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 acagacaaggggaccagaccaagaaacagacttgagggttgcagaagacgtagtaaccat 261
Query: 60 tgtgtaagagtcaaagaaaagcacccccaaccccatcattgggtctatggcagcaaagat 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 tgtgtaagagtcaaagaaaagcacccccaaccccatcattgggtctatggtagcaaagat 321
Query: 120 gaaatatacattttagtaagtaataatccaggcatataggaaggggggggtgttagcaac 179
||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct: 322 gaaatatacattttagtaagtaataatccagtcatataggaa--ggggggtgttagtaac 379
Query: 180 atggacatttggggatggcccaatcattgtactgtttaaggagtaataaaatagtagtct 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggacatttgggaatggcccaatcattgtactgtttaaggagtaataaaatagtagtct 439
Query: 240 gcccgtttttgtctttcatttgagaacccagagaattgaggcagtagtgagaaatgcgtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcccgtttttgtctttcatttgagaacccagagaattgaggcagtagtgagaaatgcgtg 499
Query: 300 cgactgcctgggagaatagaacaatttaatcaattacagctccagaagaaagagaaacta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgactgcctgggagaatagaacaatttaatcaattacagctccagaagaaagagaaacta 559
Query: 360 atgtctgcagattttgtctgacctctatatgtattcttaagacagagagacagaaggaat 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 atgtctgcagattttgtctgacctctgtatgtattcttaagacagagagacagaaggaat 619
Query: 420 gagtatagttacagaaagacggaaatgatgtattaataactcatgacac 468
||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 620 gagtatacttacagaaagacgaaaatgatgtattaataactcttgacac 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
