BAC Information

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BAC

Clone NameMSMg01-140G02
Chromosome1 (Build37)
Map Location 12,017,921 - 12,018,282
singlet/doubletsinglet
Overlap genenone
Upstream geneC030045D06Rik, A830018L16Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140G02.T7 (MSMg01no140_g02.b1)MSMg01-140G02.TJ (MSMg01no140_g02.g1)
ACCAG345534AG345535
length710711
length of high quality
(start - end)
511 (67 - 577)362 (76 - 437)
definitionCHROMAT_FILE: MSMg01no140_g02.b1 PHD_FILE: MSMg01no140_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:05 2005CHROMAT_FILE: MSMg01no140_g02.g1 PHD_FILE: MSMg01no140_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTAAACGACTCCTATAGTCCAAAATCCGCGGAATTC
CAGTTTGTTTACCCTACAGTTACAGAAGCCTCTTTTAGAAGTGCTGAAGG
CCCATGGTGTGAACTATTTTACAAACGAAAGGAGAAAAATACATTTGATT
GTCCCAATAAATGAATTATTAAAGTCAATGGATTTTGTGACTATGTATAT
AAAACTTTTAACAATTTGTGAAAAATAAGGAAAATGTTGTTGCTGCTTTG
TTGCTCCTGGCATATCTTAATATATTGACAAAGAAAAATAATGAGGTCTA
TGATAAAATTAGCCAACTTCTGGAATCTCAGAATATGGTGAAGGACAACA
ATGATATCAGTGATAAAATTGACAGGCTCCAGATGCTCATGAATAGTGTA
AGGGTTCTAGGTGTGCTCTGGAATAGAATCTTCTCTTCAGCAGCCATAGA
GCTCAAGTTGTAGAAAATCAAACTGAAGTCATCATTATAAGGGTGGCTAA
ACTACAGCAAAACTTAAAGTATCACCCTCAGAGAGTATGGGTAGTTTAAT
GTAAGGGCATTAATTGGTAATGAATGATATGGGGATGTGACAGATTATTT
CATTTTTTACCATAAACCTTTACCCCCCTTTTTTTTACCCATTTAACCCA
TTCCCTTCACCCATTTTGCCCATTTTATTTTATTCAACATCCCACCACCC
TTTTACCTCA
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATCCTCTAGAAAGCAGGAAAAGCAA
CCTGGAAGATCAAGCTTAACCTTGGAGCTATCTCTCCAGTCTCCATAAGA
AAACATTTAACAAGGTTTGCAATTATAAATACATTACAAATGTCAAAAGC
ACTCTGTACAGCTTTTCATGTGTGCTTAATGTCTGTTAATTGTTTTTTTG
GTAATGCTTTTTATACATTTCACAAAGACACATAAACCATTCACTGTGGT
TGGTCTTTTCAGTGATAAAAATTGAACGGACCCTTAGAAAATACCCTACC
TGGCAATAAGAACTAAGTGGGCCAGTCACACAATGTTGCTTCTTAATCAT
TCAGAATGATGAACCACAAACACCATCCAAGCTGGGATAGAAACCAGACA
TTGCTATTTGCTTTCCAAACTACAAGTCTTTCAAAAGTGTTAACTGCAGC
GAAAATCACTCATCAGACACTGACTTGACATTTAGTTACATACATAGAAA
GATCACTTGTAATACACTAAGCCTTTATTCAATTACACACCTGCTGCCGG
CAAGGCTTCCCTTACACGCTTGACACTCAATGCCTCCAGCTTCACGACTT
GTCAGATGCTGGTATATTCTCATGCATGCTTTGACATACCTAGGACACGC
TATCTATGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_g02.g1 MSMg01no140_g02.g1 CHROMAT_FILE:
MSMg01no140_g02.g1 PHD_FILE: MSMg01no140_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:06 2005
         (362 letters)



>mm_chr1_12017721_12018482
          Length = 762

 Score =  654 bits (338), Expect = 0.0
 Identities = 356/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctctagaaagcaggaaaagcaacctggaagatcaagcttaaccttggagctatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcctctagaaagcaggaaaagcaacctggaagatcaagcttaaccttggagctatctct 503

                                                                       
Query: 61  ccagtctccataagaaaacatttaacaaggtttgcaattataaatacattacaaatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 502 ccagtctccataagaaaacatttaacaaggtttgcaattataaatacattacaaatgccg 443

                                                                       
Query: 121 aaagcactctgtacagcttttcatgtgtgcttaatgtctgttaattgtttttttggtaat 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaagcactctgcacagcttttcatgtgtgcttaatgtctgttaattgtttttttggtaat 383

                                                                       
Query: 181 gctttttatacatttcacaaagacacataaaccattcactgtggttggtcttttcagtga 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctttttatacatttcagaaagacacataaaccattcactgtggttggtcttttcagtga 323

                                                                       
Query: 241 taaaaattgaacggacccttagaaaataccctacctggcaataagaactaagtgggccag 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 taaaaattgaacggacccttagaaaataccctacctggcaataaaaactaagtgggccag 263

                                                                       
Query: 301 tcacacaatgttgcttcttaatcattcagaatgatgaaccacaaacaccatccaagctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 tcacacaatgttgcttcttaatcattcagaatgatgaaccacaaacaccatccaagccgg 203

             
Query: 361 ga 362
           ||
Sbjct: 202 ga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)