BAC Information

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BAC

Clone NameMSMg01-140M11
Chromosome1 (Build37)
Map Location 36,074,413 - 36,074,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290
Downstream geneHs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140M11.T7 (MSMg01no140_m11.b1)MSMg01-140M11.TJ (MSMg01no140_m11.g1)
ACCAG345825AG345826
length712713
length of high quality
(start - end)
---343 (325 - 667)
definitionCHROMAT_FILE: MSMg01no140_m11.b1 PHD_FILE: MSMg01no140_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:37 2005CHROMAT_FILE: MSMg01no140_m11.g1 PHD_FILE: MSMg01no140_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATAATTGCGGCGCTAAACGACTCCTTTTCGAAGCCGCCCGCGG
AANNCNGATTTTCTCAAGCGGGGAGNNNGNNNAGGNNCNGAGGAAANNGA
ANNGACAGNGNGNACCACCCCCAACAANNCNCNACNCACANGCCAAACCC
NCCNGAGAANNAAAAGAGACCGGANANGGAGAAGGCNGGANGCACAAACC
GGACAAAGGNCAAAAGCCANCNAAACGCCNAGCAGNAAAAGAAAATTTCT
TTAANAGACNCACAGACAGAACACAACAGACNCACCCGGCAAACCCAAGA
CANNNCCCATTCTTTTTTTTTTTGCGNACAGGAACACGCACACACGCNAA
NANNGAAACAGCCCCCCCACCCCGCCGNGGNGGCGCANGCCANAAANCCC
AGCACCCGGGAGGCAGAGGCAGGCGGAACCCCGAGCCCGAGGCCAGCCCG
GCCCACAGAGCGAGNCCCAGGACAGCCAGGGCCACACAGAGAAACCCCGC
CNCAAAAAAACAAACCAACAAACAAAAGAAACAGCGAGAGAACCGGCACC
CGACNCAACACCCCCACGCAGAAGGCAGNGAAAGGGCCAAGCACAGGCGA
CGCACANGAGAAGGNCAGACGACAACCCGAAGGAACAGGCCCCCCCCTAT
TTTTTTTTATCCAGGGATCCTACCCCAGTTCACCATGTTCCGTACAAAAG
CCCCTTAATCCA
NNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXTCAACAAATGGAGGT
GACCTATAGAATTACCTACGGAATTCCAAAATGTGCCCTGTCTGGGGCCT
CTGCCTGCCTTTCTCCAGACCCTCAGGGAGTCAAAGACAGGGTCTGGAGC
CTCCCACCCTCTGTAGACAAAGAAAGAAACACTCTGTCCTCGCACAAACA
GGGTGATTGCTACAGTCGTGCTGGAGATGTAAGACTCCAACCCCACCCAT
CCTATCCCCCCACTCCTAGGGTCTGGAGAGATCGCTCAGCCTTTAAGAGC
ACTGGCTACTCTTCCAGATATACCCTGGTTCAATTCTCAGCAACCCACAG
GGCAGCTCACACCTGCCTGTGACCCCAGTTTCAGTACTTCTAACACCCTC
ATATATGCAGTCAAAACACTAATGAACATAAAATAAAAATAAATTACACA
TATTGGGTGGATCTGCTTCTAAGGAGGAACTCTGCCCTTCACCCTGATAA
TTCAGCCCATGCTTAGAACTTCAAGATCTTCATAAGATACCAACTCTGAG
GGGCCAAAGTACCCAGGACACAGAATATGGAAGACAGGTCAGCAGTGGAC
AGGGGCCAGGACGCTGCAGGGAAATCACACTGGTTGAATGTTAGGTGTGA
GAACGAGGTCAAGGAAGGAAAATGGAATAGTCTCAGACTTCATAACAGCT
AGAGAAAGCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_m11.g1 MSMg01no140_m11.g1 CHROMAT_FILE:
MSMg01no140_m11.g1 PHD_FILE: MSMg01no140_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:37 2005
         (343 letters)



>mm_chr1_36074213_36074955
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggttcaattctcagcaacccacagggcagctcacacctgcctgtgaccccagtttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggttcaattctcagcaacccacagggcagctcacacctgcctgtgaccccagtttcag 260

                                                                       
Query: 61  tacttctaacaccctcatatatgcagtcaaaacactaatgaacataaaataaaaataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttctaacaccctcatatatgcagtcaaaacactaatgaacataaaataaaaataaat 320

                                                                       
Query: 121 tacacatattgggtggatctgcttctaaggaggaactctgcccttcaccctgataattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacatattgggtggatctgcttctaaggaggaactctgcccttcaccctgataattca 380

                                                                       
Query: 181 gcccatgcttagaacttcaagatcttcataagataccaactctgaggggccaaagtaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccatgcttagaacttcaagatcttcataagataccaactctgaggggccaaagtaccc 440

                                                                       
Query: 241 aggacacagaatatggaagacaggtcagcagtggacaggggccaggacgctgcagggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacacagaatatggaagacaggtcagcagtggacaggggccaggacgctgcagggaaa 500

                                                      
Query: 301 tcacactggttgaatgttaggtgtgagaacgaggtcaaggaag 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacactggttgaatgttaggtgtgagaacgaggtcaaggaag 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)