BAC Information

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BAC

Clone NameMSMg01-140O22
Chromosome1 (Build37)
Map Location 155,686,179 - 155,686,670
singlet/doubletsinglet
Overlap geneRgsl1
Upstream geneSmg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347
Downstream gene5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140O22.T7 (MSMg01no140_o22.b1)MSMg01-140O22.TJ (MSMg01no140_o22.g1)
ACCAG345941AG345942
length709709
length of high quality
(start - end)
328 (47 - 374)491 (75 - 565)
definitionCHROMAT_FILE: MSMg01no140_o22.b1 PHD_FILE: MSMg01no140_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:49 2005CHROMAT_FILE: MSMg01no140_o22.g1 PHD_FILE: MSMg01no140_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTTGCCATGTTTCTCTTACCCATCCCTCCTTTTTAAACAAGCTTTG
TAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCT
CTCTCTCCTTCTCTGTCTTCCCTCTCTCCCTCTTTTCTTTCCCCCCTCCC
CTCCTCTCCTCCTCCTCCTCCTCTTCCTCCCCCTCCTCTTCTCCTTTTCC
AACATGGTCTCTTTTGCATAATTCTGCCTTCCTGGAATTCACTATGTAGA
CCAGACTGGCCTTGGATTTACAGAGACCCAGCTGCCTCTCTGCATCTTGA
GTGCCGGGATTAAAGTGTGTGCCACCAAACCCAGCTAGACTCTTGTTTCT
TTACTTACCTTAATTACACCACGAAAATAAAACTAACTGGAATTCAGTCT
CCACAAAATTTTATCTAGAATCCTGAGGAATAAAGCCCAAGAAAGCAGTT
TGAGAAGCATTAATAAATCTAAAGAGTGATATGCTGTCGCTGATTGGCCT
GCTGCCCAATAAGTGCCCTGGCCTCTGAAGGCCTGCGACCTTGCTCTCTG
TTTGTATCTCCAGGTGAATATCGATTTCCAGACCCGAGAGGCCACAAGGA
AAACATGCCACAGCCATCCCTGACTTGTTTTGATCAAGCTCACGGAAAAG
TCCACAGCC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTTTACATCAGGTGAGCAGTTAG
GAAACTTCTCAAGTCTATTATAGTTGTTGGGTAGTAGATGCTTGGACCAC
TCTGCTGAGAAGTCTCAGATCACACACCTAAGCAAGAAAGAATCTAAGAA
TTGGTTGGCAATAAGCTGGGGCCAACGCTAAGATCAGATCTGTACTACAG
CTGCAGACTCAAGCTAGATGCCTCTCTTCTCAAAGCATGACTTCCTCTTA
CCTTTGACCCCTTATTTCTTTTCCTTTTCCTTATAAATTATTCTTTTCTT
TGTTCCTTTTCCATTACATAGACATTAGATCTGCCGGTGGCTTTCTGTGC
TATGCTAGTGGTATGAGTTACTGGAGAGATCCCACTGACCCTAGTTCCCA
GCAAGAGTTTGTTTCTCTCTGAGTTTTAGAGGCCTAAGAGAAGCCATCTT
GTTGAAATAATTAATTAAATAAATCTCAACAGTGGGCAGTTTCAGGTTTC
ACTACCTGCCTTAATGGTTTACATTCTGGAATGAAAGACACACACATATA
CCCACCCCAGATTTATATATACAAGATATTACTACAGCATCATACTTCAA
TTATTAAACTTGGCTTCTCTACCATAGCTCACGCTTCACTTTTTCCCCCT
CTCTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_o22.g1 MSMg01no140_o22.g1 CHROMAT_FILE:
MSMg01no140_o22.g1 PHD_FILE: MSMg01no140_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:49 2005
         (491 letters)



>mm_chr1_155685979_155686870
          Length = 892

 Score =  944 bits (488), Expect = 0.0
 Identities = 491/492 (99%), Gaps = 1/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctttac-atcaggtgagcagttaggaaacttctcaagtctattatagttgttgggta 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttcctttacaatcaggtgagcagttaggaaacttctcaagtctattatagttgttgggta 633

                                                                       
Query: 60  gtagatgcttggaccactctgctgagaagtctcagatcacacacctaagcaagaaagaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtagatgcttggaccactctgctgagaagtctcagatcacacacctaagcaagaaagaat 573

                                                                       
Query: 120 ctaagaattggttggcaataagctggggccaacgctaagatcagatctgtactacagctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctaagaattggttggcaataagctggggccaacgctaagatcagatctgtactacagctg 513

                                                                       
Query: 180 cagactcaagctagatgcctctcttctcaaagcatgacttcctcttacctttgacccctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cagactcaagctagatgcctctcttctcaaagcatgacttcctcttacctttgacccctt 453

                                                                       
Query: 240 atttcttttccttttccttataaattattcttttctttgttccttttccattacatagac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atttcttttccttttccttataaattattcttttctttgttccttttccattacatagac 393

                                                                       
Query: 300 attagatctgccggtggctttctgtgctatgctagtggtatgagttactggagagatccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attagatctgccggtggctttctgtgctatgctagtggtatgagttactggagagatccc 333

                                                                       
Query: 360 actgaccctagttcccagcaagagtttgtttctctctgagttttagaggcctaagagaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actgaccctagttcccagcaagagtttgtttctctctgagttttagaggcctaagagaag 273

                                                                       
Query: 420 ccatcttgttgaaataattaattaaataaatctcaacagtgggcagtttcaggtttcact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccatcttgttgaaataattaattaaataaatctcaacagtgggcagtttcaggtttcact 213

                       
Query: 480 acctgccttaat 491
           ||||||||||||
Sbjct: 212 acctgccttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space:   424242
Effective search space used:   424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)