Query= MSMg01no140_p21.b1 MSMg01no140_p21.b1 CHROMAT_FILE:
MSMg01no140_p21.b1 PHD_FILE: MSMg01no140_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:54 2005
(624 letters)
>mm_chr1_51209086_51210104
Length = 1019
Score = 1112 bits (575), Expect = 0.0
Identities = 601/611 (98%), Gaps = 5/611 (0%)
Strand = Plus / Minus
Query: 1 gatgtagctatatgacattttcaaatgccagacatttgcatatgaaggtctctttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gatgtagctatatgacattttcaaatgccagacatttgcatatgaaggtctctttcttcc 547
Query: 61 cctttcagtaaacagtctttcctattacttccaaagcaatgttcggaattaaattcccta 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 cctttcagtaaacagtctttcctattacttccaaagcaatgttcagaattaaattcccta 487
Query: 121 taaaagtttgttcttaaagtgtttttaaatgtccagaagagatgagaaattaaactccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 taaaagtttgttcttaaagtgtttttaaatgtccagaagagatgagaaattaaactccca 427
Query: 181 aactggaatccattagttttttttctttttcttttttgaggagttaaaaaaaaagtatct 240
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 aactggaatccattag-tttttttctttttcttttttgaggagtt-aaaaaaaagtatct 369
Query: 241 ataaatttatgatacacacacctatacatcttctgtttgtgtagcttttcacaaaaaaat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 368 ataaatttatgatacacacacctatacatcttctgtttgtgtagcttttcacaaaaaatt 309
Query: 301 tttgaaattttattaatacaggtaaaaatgtcataagaggaaaacaagaggaggttactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttgaaattttattaatacaggtaaaaatgtcataagaggaaaacaagaggaggttactt 249
Query: 361 ttatatgaggacttgttctgcttctagagcaatgacccctggtcttgatggaatagttgt 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttatatgaggac---ttctgcttctagagcaatgacccctggtcttgatggaatagttgt 192
Query: 421 aaggtgctgaccatgcatcaggcgcttttctaggtgccacgtttataatagggaacagga 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 191 aaggtgctgaccatgcatcaggcgcttttctaggtgccacatttataatagggaacagga 132
Query: 481 tggttttcctgccctcatggagtttgaatgataactaaagaagacaaggaataaaaggta 540
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggctttcctgccctcatggactttgaatgataactaaagaagacaaggaataaaaggta 72
Query: 541 aaccacaaatgcacaaacaaaattctgttcacattaaagagactgggaaaactaaagcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aaccacaaatgcacaaacaaaattctgttcacattaaagagactgggaaaactaaagcat 12
Query: 601 gccatttgcag 611
|||||||||||
Sbjct: 11 gccatttgcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1019
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1009
Effective search space: 619526
Effective search space used: 619526
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_p21.g1 MSMg01no140_p21.g1 CHROMAT_FILE:
MSMg01no140_p21.g1 PHD_FILE: MSMg01no140_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:54 2005
(643 letters)
>mm_chr1_51063781_51064827
Length = 1047
Score = 1158 bits (599), Expect = 0.0
Identities = 634/647 (97%), Gaps = 4/647 (0%)
Strand = Plus / Plus
Query: 1 agttgagagagaatgcacagaaactctgtagactcagatcagacaaaaatcacagcatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgagagagaatgcacagaaactctgtagactcagatcagacaaaaatcacagcatgg 260
Query: 61 agggtaaggatggacacaaagacccacttctacagaaggagcaatcgagaactaacaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtaaggatggacacaaagacccacttctacagaaggagcaatcgagaactaacaggt 320
Query: 121 actgggtgaggcagagacagttttctttaaggatgtgaatcatggtgggtcgacacaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgggtgaggcagagacagttttctttaaggatgtgaatcatggtgggtcgacacaagt 380
Query: 181 tcaaagcatatacggaaagaatgagctgtacatgatgggtttaaatcaaaagggggcgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagcatatacggaaagaatgagctgtacatgatgggtttaaatcaaaagggggcgaa 440
Query: 241 attttgtgataaggaaaaataggagaagttggcaaaagggatgaatatgatcacaataca 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 441 attttgtgataaggaaaaataggagaagttggcaaaagggatgaatacgatcaaaataca 500
Query: 301 ttgcatgaaattctaaaa---aaaaaaaaagaattaaaaagtgagtggagaaaaatgaag 357
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttgcatgaaattctaaaagaaaaaaaaaaagaattaaaaagtgagtggagaagaatgaag 560
Query: 358 agtatagatggatgagaggggaaccttactaactgtattcatttttttt-aaccaatgtc 416
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 561 agtatagatggatgagaggggaaccttactagctgtattcatttttttttaaccaatgtc 620
Query: 417 agattttcttttggttttatcacataagaacctaatttccctgattttgcttcctggttt 476
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 agactttcttttggttttatcacataagaacctaatttccctgattctgcttcctggttt 680
Query: 477 atacatcctaaaatactttctgttttgtaaccaagagaaaaacattacccacctctactc 536
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 atacatcctaagatactttctgttttgtaaccaagagaaaaacattacccacctctgctc 740
Query: 537 tactggcaaaaccagatgagacattcagaactgggcctcatatctatcgcccttgcaata 596
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 tactggcaaaaccagatgagacattcagaactgggccgcatatctatcgcccttgcaata 800
Query: 597 cactgaagcacttaaatagttcataaagaattttgtttaaaaagcat 643
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cactgaagcacttaaatagttcataaagaattttgtttaaaaagcat 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1047
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1037
Effective search space: 656421
Effective search space used: 656421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
