Query= MSMg01no141_c04.b1 MSMg01no141_c04.b1 CHROMAT_FILE:
MSMg01no141_c04.b1 PHD_FILE: MSMg01no141_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:12 2005
(686 letters)
>mm_chr1_71340264_71341350
Length = 1087
Score = 969 bits (501), Expect = 0.0
Identities = 560/581 (96%), Gaps = 8/581 (1%)
Strand = Plus / Minus
Query: 1 aaattgagaactaagatgactg-ctttaaccctcaaaaagcagaacattccccgtcatat 59
|||||||||||||||||||||| ||||| | ||| |||||||| | || || |||||||
Sbjct: 576 aaattgagaactaagatgactgaatttaatcttcagaaagcagatcgtttcctgtcatat 517
Query: 60 taaggcttttctgttcatggacatagatcttgatgaataacctttattcaacactgactg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taaggcttttctgttcatggacatagatcttgatgaataacctttattcaacactgactg 457
Query: 120 ctctaggtttaaacaaaacttaaatttataattggtagtgattatcaatattcaaccaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctctaggtttaaacaaaacttaaatttataattggtagtgattatcaatattcaaccaat 397
Query: 180 aaatattttagtatattctcatttaagactgtatcacctgaaataaattt-aggaacact 238
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 396 aaatattttagtatattctcatttaagactgtatcacctgaaataaatttca-gaacact 338
Query: 239 ttcaggtcctgatatcatttaatttgaatcttcacactctattactctgtaatttcctac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttcaggtcctgatatcatttaatttgaatcttcacactctattactctgtaatttcctac 278
Query: 299 cttataaatttctgagcaacatttattaagcttaggcatatattttgggttgttaaaagg 358
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 277 cttataaatttctgagcaacatttaataagcttaggcatatattttggattgttaaaagg 218
Query: 359 catgctccaagtatttcctctttctctctctctctttctatctctgtctctgcccccctc 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 217 catgctccaagtatttcctctttctctctctctctttctgtctctgtctctgccc---tc 161
Query: 419 tctctctctctgtctctctctctctctctcattgtagtatttttagcaagggacttaagt 478
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 -ctctctctctgtctctctgtctctctctcattgtagtatttttagcaagggacttaagt 102
Query: 479 attttaaa-tagacttagagagtgagctctgtctttcctatatatctaacgggttgagca 537
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 101 attttaaaatagacttagagagtgagctctgtctttcctatatgtctaacgggttgagca 42
Query: 538 ttttgaggccttccaggtgagatgtgctggaacaatcacca 578
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ttttgaggccttccaggtgagatgtgctggaacaatcacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_c04.g1 MSMg01no141_c04.g1 CHROMAT_FILE:
MSMg01no141_c04.g1 PHD_FILE: MSMg01no141_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:12 2005
(683 letters)
>mm_chr1_71165486_71166568
Length = 1083
Score = 1151 bits (595), Expect = 0.0
Identities = 661/683 (96%)
Strand = Plus / Plus
Query: 1 ctctgtaatcagatatgggggtggggtgcctgcggctggctaactaccccgatggagagg 60
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctctgtaatcagacacgggggtggggtgcctgcggctggctaactacagtgatggagagg 260
Query: 61 atgtgcacagttttgtaagactgaagtcctcaacctgacgattgaagcactacctccagg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgtacagttttgtaagactgaagtcctcaacctgacgattgaagcactacctccagg 320
Query: 121 tagactatctctgaattgaattgaatcggcacactatgacagttggctactacagaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagactatctctgaattgaattgaatcggcacactatgacagttggctactacagaattg 380
Query: 181 actgatcagctgctggaactgcttctatatactaagagtgcctggaaagagagaaggcat 240
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 381 actgatcggctgctggaactgcttctatatactaagagtgcctggaaacagagaacgcat 440
Query: 241 ctgcgtttattactgggtgatagaaatgaagacaccccttcttccgttacattgcctttg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 441 ctgcgtttattactgggtgatagaaatgaagacaccccttcctccgttacaatgcctttg 500
Query: 301 tcatgctattttatcatagcaatttaagtaactaagacactgtgttgggtaccagataag 360
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 501 tcatgctattttatcatagcaacagaagtaactaagacactgtgttgggtacaagataag 560
Query: 361 caaaggtgaatgagtgacccaaccaaagttctcacagaatttacaacgtgtggtttcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaggtgaatgagtgacccaaccaaagttctcacagaatttacaacgtgtggtttcctt 620
Query: 421 tcactagctctaatacaaggaaaacacttccctgcctacagtgttgctataaagaacaaa 480
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tcactagctctaacacaaggaaaacacttcccttcctacagtgttgctataaagaacaaa 680
Query: 481 cgagaataccttatttctctattgttagaagtaaaagtgcttatctcgttgatatatgct 540
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 681 cgagaataccttatttctctattgtcagaagtaacggtgcttatctcgttgatatatgct 740
Query: 541 aatgttagaaatgaatggcacccatatagacctcttagaacagtctcatggaaactgcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgttagaaatgaatggcacccatatagacctcttagaacagtctcatggaaactgcac 800
Query: 601 catctttttcctaaaatgaagtatgtcttcttatctggatgcatttctccattgttctct 660
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 catctttttcccaaaatgaagtatatcttcttatctggatgcatttctccattgttctct 860
Query: 661 aagtttacaactgtaatcttaga 683
|||||||||||||||||||||||
Sbjct: 861 aagtttacaactgtaatcttaga 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
