Query= MSMg01no141_d16.b1 MSMg01no141_d16.b1 CHROMAT_FILE:
MSMg01no141_d16.b1 PHD_FILE: MSMg01no141_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:23 2005
(740 letters)
>mm_chr1_114939306_114940445
Length = 1140
Score = 1094 bits (566), Expect = 0.0
Identities = 602/614 (98%), Gaps = 2/614 (0%)
Strand = Plus / Minus
Query: 1 gcattataatgctaatggtttgctctagccctttctcatccatactatgacaagctttta 60
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 613 gcattataatgctaatggtttgctctagatttttctcatccatactatgagaagctttta 554
Query: 61 tatgtggaactgaatagctaaattctctttccatggaagaaagtgtccctgcttcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tatgtggaactgaatagctaaattctctttccatggaagaaagtgtccctgcttcacaaa 494
Query: 121 tctggattatttaaaatatcattgtttgaaaggcttagctttatatatcacagcaattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctggattatttaaaatatcattgtttgaaaggcttagctttatatatcacagcaattca 434
Query: 181 ttcattttcaaacatttatgcatgaggtagaagaattataatttacaatactgtttgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttcattttcaaacatttatgcatgaggtagaagaattataatttacaatactgtttgtaa 374
Query: 241 tttaaagtacattaaacccaaattctaataaccttgtaattgaaatacatgctcttcaaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttaaaatacattaaacccaaattctaataaccttgtaattgaaatacatgctcttcaaa 314
Query: 301 aaatgtagtatataaataagccttaatattgctatatgactccagtacaaattcagaaat 360
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 313 aaatgtagtatataaataagccataatattgctatatgactccaatacaaattcagaaat 254
Query: 361 gatggatattatgcttatttttagtttctggaattgcgtgaaatatacaatgtttatg-t 419
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 253 gatggttattatgcttatttttagtttctggaattgcgtgaaatatacaatgtttatgct 194
Query: 420 tttccataactgtgataaaccaccttgaccaaaagaaactttgatgaggaaatacttgca 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttt-cataactgtgataaaccaccttgaccaaaagaaactttgatgaggaaatacttgca 135
Query: 480 aatccagatcacagtgcaagactgaatgcagccagggtagaagtttgggtagaaaggagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aatccagatcacagtgcaagactgaatgcagccagggtagaagtttgggtagaaaggagg 75
Query: 540 aacacttcttgctgacttgtttgtacaagctcatttattttttcctatgtagtgaaggac 599
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 74 aacactttttgctgacttgtttgtacaagttcatttattttttcctatgtagtgaaggac 15
Query: 600 cacctactcagcaa 613
||||||||||||||
Sbjct: 14 cacctactcagcaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1140
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1130
Effective search space: 824900
Effective search space used: 824900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_d16.g1 MSMg01no141_d16.g1 CHROMAT_FILE:
MSMg01no141_d16.g1 PHD_FILE: MSMg01no141_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:24 2005
(747 letters)
>mm_chr1_114784256_114785400
Length = 1145
Score = 1367 bits (707), Expect = 0.0
Identities = 737/747 (98%), Gaps = 2/747 (0%)
Strand = Plus / Plus
Query: 1 ctttcagtcttttgggtcagttgttctgcacgttacacagctcccagaaggcctttagac 60
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct: 201 ctttcagtcttttgggtcagttgttctgcatgccacacagctcccagaaggtctttagac 260
Query: 61 tgtgttgtctgttgcacagttgccctgtgtaaagaggagctcttgaatgctgtcaagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgttgtctgttgcacagttgccctgtgtaaagaggagctcttgaatgctgtcaagctg 320
Query: 121 tggtgtcttcgtggaagcaaacaagctagtgatctgctgctgttgccttgtgtgtagcag 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tggtgtcttcgtggaagcaaacaagctagtgatatgctgctgttgccttgtgtgtagcag 380
Query: 181 atttcctgggatgccagttgccttgtttgcagccgatcttcttggatgtctcaggttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcctgggatgccagttgccttgtttgcagccgatcttcttggatgtctcaggttgta 440
Query: 241 cactcagttgctctgagtgcagtggatcttctgggctggctcaggatatggtgtctccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcagttgctctgagtgcagtggatcttctgggctggctcaggatatggtgtctccag 500
Query: 301 tggacagactcgctaacagtctgtcccagcagaaagaacagtgaagaaagggcaaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggacagactcgctaacagtctgtcccagcagaaagaacagtgaagaaagggcaaaattt 560
Query: 361 tactcttaatgtatagaattggaagaaaaaaaatgacatttagcttttaaaagatgccct 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 tactcttaatgtatagaattggaagaaaaaaa-tgacatttagcttttaaaagatgccct 619
Query: 421 tttgacagttattaatacaaatgcaaaataagaccccccaaataccattttaataatagt 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 tttgacagttattaatacaaatgcaaaataagaccccc-aaataccattttaataatagt 678
Query: 481 ttacatagagcagcaatttattctgaaatgttcatttagtttgggataaatctcatgttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttacatagagcagcaatttattctgaaatgttcatttagtttgggataaatctcatgttt 738
Query: 541 caataataaaagagcagccatctcatttcaaattccatgatatataacagttatagcaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caataataaaagagcagccatctcatttcaaattccatgatatataacagttatagcaca 798
Query: 601 gcaaaaattctacctccttttgataaaatatagttcaaataaaatagttaaattcaatgc 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 gcaaaaattctacctccttttgataaaatatagttcacataaaatagttaaattcaatgc 858
Query: 661 tttacaattacacagatttgagtacaaaattgtgtgaattgttacactgtagctatgtct 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 859 tttacaattacacagatttgagtacaaaattgtgtgagttgttacactgtagctatgtct 918
Query: 721 atgcacaccaggtgatcataacgtcat 747
|||||||||||||||||||| ||||||
Sbjct: 919 atgcacaccaggtgatcatagcgtcat 945
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1145
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1135
Effective search space: 836495
Effective search space used: 836495
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
